Locus 3868

Sequence ID 2L_DroMel_CAF1
Location 11,329,555 – 11,329,656
Length 101
Max. P 0.511089
window6088

overview

Window 8

Location 11,329,555 – 11,329,656
Length 101
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 78.88
Mean single sequence MFE -15.10
Consensus MFE -8.37
Energy contribution -8.32
Covariance contribution -0.06
Combinations/Pair 1.12
Mean z-score -1.68
Structure conservation index 0.55
SVM decision value -0.04
SVM RNA-class probability 0.511089
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11329555 101 - 22407834
AAAAUAUGCAUAAAUAUGCAAUGUAAACG-----------CAAGC-GCGGGCACGAAUAAAGCAUGUCCAAGUAAUAUCAGCUUAUAAUAAACUAAAUUAUUAAACAAAUGCA
......(((((....))))).(((...((-----------(....-))).)))........((((....((((.......)))).((((((......)))))).....)))). ( -15.60)
>DroVir_CAF1 43339 101 - 1
AAAAUAUGCACAAAUAUGCAACGUGAACG-----------CGAAC-AAAAACACGAAUAAAGCAUGUCAAUGUAAUAACAAAAUAUAAUAAAGCAAAUUAUUAAACAAAUGCA
......((((......)))).((((....-----------.....-.....))))......((((.....(((....))).....((((((......)))))).....)))). ( -10.64)
>DroPse_CAF1 60329 113 - 1
AAAAUAUGCAUAAAUAUGCAAUGCAAACGGGCAGCGAGUGCAGGCAGCGGGCACGAAUAAAGCAUGUCACAGUAAUAGCAGAAUAUAAUAAACUAAAUUAUUAAACAAAUGCA
...((((((.......(((..((((..((.....))..)))).))).((....))......))))))..........(((.....((((((......))))))......))). ( -19.60)
>DroWil_CAF1 55201 97 - 1
AAAAUAUGCAUAAAUAUGCAACGUGAAUG---------------U-GCAGCCACGAAUAAAGCAUGUCAGAGUAAUAACAGAAUAUAAUAAAGUAAAUUAUUAAACAAAUGCA
......(((((....))))).((((....---------------.-.....))))......((((.....((((((....................))))))......)))). ( -12.25)
>DroMoj_CAF1 61809 89 - 1
AAAAUAUGCACAAAUGUGCAGCGC------------------------AAACACGAAUAGAGCAUGUCCAUGUAAUAACAAAAUAUAAUAAAGCAAAUUAUUAAACAAAUGCA
......(((((....)))))..((------------------------(............((((....))))............((((((......))))))......))). ( -12.90)
>DroPer_CAF1 60619 113 - 1
AAAAUAUGCAUAAAUAUGCAAUGCAAACGGGCAGCGAGUGCAGGCAGCGGGCACGAAUAAAGCAUGUCACAGUAAUAGCAGAAUAUAAUAAACUAAAUUAUUAAACAAAUGCA
...((((((.......(((..((((..((.....))..)))).))).((....))......))))))..........(((.....((((((......))))))......))). ( -19.60)
>consensus
AAAAUAUGCAUAAAUAUGCAACGCAAACG___________CA_GC_GCAGGCACGAAUAAAGCAUGUCAAAGUAAUAACAGAAUAUAAUAAACUAAAUUAUUAAACAAAUGCA
......(((((....))))).........................................((((......((....))......((((((......)))))).....)))). ( -8.37 =  -8.32 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:19 2006