Locus 3865

Sequence ID 2L_DroMel_CAF1
Location 11,315,208 – 11,315,298
Length 90
Max. P 0.903431
window6083

overview

Window 3

Location 11,315,208 – 11,315,298
Length 90
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 79.46
Mean single sequence MFE -27.04
Consensus MFE -22.10
Energy contribution -23.13
Covariance contribution 1.03
Combinations/Pair 1.09
Mean z-score -1.76
Structure conservation index 0.82
SVM decision value 1.03
SVM RNA-class probability 0.903431
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11315208 90 - 22407834
GCUGGCGGCGCUGUUUGGCCAAAGUGUGGAAAAUAAAUGUAUGGAAAUUUGCAUACGAAUUUCGAAUUUCAAAUGGCGCUGCCUC--UU-----------------------U--CC
...((((((((((((((((((.....)))..............((((((((....)))))))).....)))))))))))))))..--..-----------------------.--.. ( -32.30)
>DroGri_CAF1 40302 87 - 1
GCUCGCGGCGCUGUUUGCCCAAAGUGUGGAAAAUAAAUGUAUGAAAAUUUGCAUACGAAUUUCGAAUUUCAAAUGGCGUUGUUCCCC------------------------------
....(((((((((((((.(((.....)))........((((((........))))))............))))))))))))).....------------------------------ ( -21.50)
>DroSec_CAF1 34936 83 - 1
GCUGGCGGCGCUGUUUGGCCAAAGUGUGGAAAAUAAAUGUAUGGAAAUUUGCAUACGAAUU-------UCCAAUGGCGCUGCCUC--UU-----------------------U--CC
...((((((((((((((.(((.....)))....)))))...((((((((((....))))))-------))))..)))))))))..--..-----------------------.--.. ( -31.80)
>DroWil_CAF1 43470 85 - 1
GCUGGCGGCUCUGUUUGGGCAAAGUGUGGAAAAUAAAUGUAUGAAAAUUUGCAUACGAAUUUCGAAUUUGAAAUGGC--UGCCUC--UA----------------------------
...(((((((..(((((((....(((((.(((...............))).)))))....))))))).......)))--))))..--..---------------------------- ( -19.26)
>DroMoj_CAF1 47665 94 - 1
GCUCGCGGCGCUGUUUGCCCAAAGUGUGGAAAAUAAAUGUAUGGAAAUUUGCAUACGAAUUUCGAAUUUCAAAUGGCGUUGCCGCCGCA-----------------------CCGUC
((..(((((((((((((.(((.....)))..............((((((((....))))))))......))))))))))))).))....-----------------------..... ( -26.50)
>DroAna_CAF1 31315 113 - 1
GCUGGCGGCGCUGUUUGGCCAAAGUGUGGAAAAUAAAUGUAUGGAAAUUUGCAUACGAAUUUCGAAUUUCAAAUGGCGUUGCCUC--UUGCCUCUCGCCGACCCUCUCUUUCU--CC
((.((((((((((((((((((.....)))..............((((((((....)))))))).....)))))))))))))))..--..))......................--.. ( -30.90)
>consensus
GCUGGCGGCGCUGUUUGGCCAAAGUGUGGAAAAUAAAUGUAUGGAAAUUUGCAUACGAAUUUCGAAUUUCAAAUGGCGUUGCCUC__UU_______________________U__CC
...((((((((((((((.(((.....)))........((((((........))))))............)))))))))))))).................................. (-22.10 = -23.13 +   1.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:15 2006