Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,314,483 – 11,314,601 |
Length | 118 |
Max. P | 0.972857 |
Location | 11,314,483 – 11,314,601 |
---|---|
Length | 118 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.82 |
Mean single sequence MFE | -25.28 |
Consensus MFE | -21.52 |
Energy contribution | -21.19 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.11 |
Mean z-score | -2.55 |
Structure conservation index | 0.85 |
SVM decision value | 1.70 |
SVM RNA-class probability | 0.972857 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11314483 118 + 22407834 UGCGGUCGGA-CGUUGUAUUAAAAUUGUUAAUUGGUUUUGUUUUUAAUCUGUCAAUCAAUUAAA-AAACAACUGCGAUUUAAUUAAUUAAAUCAACAAAGACCGCAAUAAUGCAGCGCCA .......((.-((((((((((...((((.....((((((.((((((((.((.....))))))))-))........(((((((....)))))))....)))))))))))))))))))))). ( -27.00) >DroVir_CAF1 32844 120 + 1 UGCGGUUGUCAUUUUGUAUUAAAAUUGUUAAUUGGUUUUGUUUUUAAUCUGUCAAUCAAUUAAAAAUACAACUGCGAUUUAAUUAAUUAAAUCAACAAAGACCGCAAUAAUCCAACACCA (((((((.....(((((................((((.((((((((((.((.....)))))))))))).))))..(((((((....))))))).)))))))))))).............. ( -24.50) >DroGri_CAF1 39843 120 + 1 UGCGGUUGUCAUUUUGUAUUAAAAUUGUUAAUUGGUUUUGUUUUUAAUCUGUCAAUCAAUUAAAAAAACAACGGCGAUUUAAUUAAUUAAAUCAACAAAGACCGCAAUAAUCCAACACCA ((((((((((...((((..((((((((.....))))))))((((((((.((.....)))))))))).)))).)))(((((((....)))))))......))))))).............. ( -22.10) >DroEre_CAF1 36283 119 + 1 UGCGGUCGCA-CGUUGUAUUAAAAUUGUUAAUUGGUUUUGUUUUUAAUCUGUCAAUCAAUUAAAAAAACAACUGCGAUUUAAUUAAUUAAAUCAACAAAGACCGCAAUAACGCAGCGCCA ((((((((((-.(((((..((((((((.....))))))))((((((((.((.....)))))))))).))))))))(((((((....)))))))......))))))).............. ( -30.30) >DroMoj_CAF1 47137 120 + 1 UGUGGUUGUCAUUUUGUAUUAAAAUUGUUAAUUGGUUUUGUUUUUAAUCUGUCAAUCAAUUAAAAAAACAACUGCGAUUUAAUUAAUUAAAUCAACAAAGACCGCAAUAAUCCAACACCA (((((((.....(((((................((((...((((((((.((.....))))))))))...))))..(((((((....))))))).)))))))))))).............. ( -19.60) >DroAna_CAF1 30899 119 + 1 UGCGGUUGUC-AGUUGUAUUAAAAUUGUUAAUUGGUUUUGUUUUUAAUCUGUCAAUCAAUUAAAAAAACAACUGCGAUUUAAUUAAUUAAAUCAACAAAGGCCGCAAUAAUGCAGCGCCA .(((((((((-((((.......)))))((((((((((................))))))))))....))))))))(((((((....)))))))......(((((((....))).).))). ( -28.19) >consensus UGCGGUUGUC_UGUUGUAUUAAAAUUGUUAAUUGGUUUUGUUUUUAAUCUGUCAAUCAAUUAAAAAAACAACUGCGAUUUAAUUAAUUAAAUCAACAAAGACCGCAAUAAUCCAACACCA (((((((........(((.........((((((((((................)))))))))).........)))(((((((....)))))))......))))))).............. (-21.52 = -21.19 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:14 2006