Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,313,187 – 11,313,285 |
Length | 98 |
Max. P | 0.773213 |
Location | 11,313,187 – 11,313,285 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 78.40 |
Mean single sequence MFE | -30.22 |
Consensus MFE | -15.16 |
Energy contribution | -14.97 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.11 |
Mean z-score | -2.17 |
Structure conservation index | 0.50 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.773213 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11313187 98 + 22407834 --CGGGAUGCCGGGA----GGAUGACUGCGUUUU-GGUCUCUCUGUUAGCGGAAAUGCAAAACAAGGCCAAAGCGGCAGAUUUAUUGACAUCUUCGUUGGC--UCUU --.((((.(((((((----(((((.(((((((((-(((((...((((.(((....)))..)))))))))))))).)))).((....))))))))).)))))--)))) ( -36.60) >DroVir_CAF1 31647 82 + 1 --------------------GCUGCCUGCGUUUU-G--GUUUCUGUUAGCGGAAAUGCAAAACAAGGCCAAACCGGCAGAUUUAUUGACAUCUUCGUUGGU--UGCU --------------------((.((((..(((((-(--(((((((....))))))).)))))).))))..(((((((((((........))))..))))))--))). ( -27.90) >DroPse_CAF1 45581 95 + 1 GG----------GGAUGGGGCAUGACUGCGUUUUUGGUCUCUCUGUUAGCGGAAAUGCAAAACAAGGCCAAAGCGGCAGAUUUAUUGACAUCUUCGUUGCU--CCGU ..----------..(((((((....((((..(((((((((...((((.(((....)))..)))))))))))))..)))).......(((......))))))--)))) ( -29.00) >DroGri_CAF1 38630 81 + 1 --------------------ACUGCGUU-UUUCU-G--UUCUCUGUUAGCGGAAAUGCAGAACAAGGCCAAUGCGGCAGAUUUAUUGACAUCUUCGUUGGC--UGUU --------------------.(((((((-..(((-(--((.......))))))))))))).....(((((..((((.((((........))))))))))))--)... ( -23.80) >DroSim_CAF1 32786 98 + 1 --CGGGAUGCCGGGA----GGAUGACUGCGUUUU-GGUCUCUCUGUUAGCGGAAAUGCAAAACAAGGCCAAAGCGGCAGAUUUAUUGACAUCUUCGUUGGC--UCUU --.((((.(((((((----(((((.(((((((((-(((((...((((.(((....)))..)))))))))))))).)))).((....))))))))).)))))--)))) ( -36.60) >DroAna_CAF1 29761 88 + 1 ------------AGA----GGAUGACUGCGUUUU-UGUC--UCUGUUAGCGGAAAUGCAAAACAAGGCCAGAACGGCAGAUUUAUUGACAUCUUCGUUGGCCGUCUU ------------...----....(((((((((((-(((.--.......)))))))))))......(((((..((((.((((........)))))))))))))))).. ( -27.40) >consensus ____________GGA____GGAUGACUGCGUUUU_GGUCUCUCUGUUAGCGGAAAUGCAAAACAAGGCCAAAGCGGCAGAUUUAUUGACAUCUUCGUUGGC__UCUU ............................................(((((((((.((((((......(((.....))).......))).))).)))))))))...... (-15.16 = -14.97 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:13 2006