Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,310,062 – 11,310,163 |
Length | 101 |
Max. P | 0.508895 |
Location | 11,310,062 – 11,310,163 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 95.42 |
Mean single sequence MFE | -33.90 |
Consensus MFE | -27.16 |
Energy contribution | -27.04 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.07 |
Mean z-score | -1.52 |
Structure conservation index | 0.80 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.508895 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11310062 101 + 22407834 UGCACGUUAAUCAGCUCUUGCGGGCUGUCCAUAACCCAAUGAGCCACCGUGGAGCUGGGAUCCGUGGAUCUGAUUCCACUUCUGGUGCGAUUCAUCACUCG .((((......(((((((.((((...(..(((......)))..)..)))))))))))(((...(((((......))))).))).))))............. ( -33.40) >DroSec_CAF1 29760 100 + 1 UGCACGUUAAUCAGCUCAUG-GGGCUGUCCAUAACCCAAUGAGCCACCGUGGAGCAGGGAUCCGUGGAUCUGAUUCCACUUCUGGUGCGAUUCAUCACGCG .((..((.((((.(((((((-((...........))).))))))((((((((((...(((((....)))))..))))))....)))).)))).))...)). ( -33.30) >DroSim_CAF1 29717 100 + 1 UGCACGUUAAUCAGCUCUUG-GGGCUGUCCAUAACCCAAUGAGCCACCGUGGAGCUGGGAUCCGUGGAUCUGAUUCCACUUCUGGUGCGAUUCAUCACGCG .((..((.((((.(((((((-((...........))))).))))((((((((((.(.(((((....))))).)))))))....)))).)))).))...)). ( -34.80) >DroEre_CAF1 31654 100 + 1 UGCACGUUAAUCAGCUCUUG-GGGCUGUCCAUAACCCAUUGAGCCACCGUGGAGCUCGGAUCCGUGGAUCUGAUUCCACUUCUGGUUCGAUUUAUCACUCG .....((((..(((((....-.)))))....))))..(((((((((..((((((.(((((((....)))))))))))))...))))))))).......... ( -37.20) >DroYak_CAF1 29921 100 + 1 UGCACGUUAAUCAGCUCUUG-GGGCUGUCCAUAACCCAUUGAGCCGCCGUGGAGCUGGGAUUCGUGGAUCUGAUUCCACUUCUGGUUCGAUUCAUCACUCG .....((((..(((((....-.)))))....))))..(((((((((..((((((.(.(((((....))))).)))))))...))))))))).......... ( -30.80) >consensus UGCACGUUAAUCAGCUCUUG_GGGCUGUCCAUAACCCAAUGAGCCACCGUGGAGCUGGGAUCCGUGGAUCUGAUUCCACUUCUGGUGCGAUUCAUCACUCG .....((((..((((((....))))))....))))....((.((((..((((((.(.(((((....))))).)))))))...)))).))............ (-27.16 = -27.04 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:10 2006