Locus 3860

Sequence ID 2L_DroMel_CAF1
Location 11,308,527 – 11,308,646
Length 119
Max. P 0.862426
window6078

overview

Window 8

Location 11,308,527 – 11,308,646
Length 119
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 93.25
Mean single sequence MFE -22.31
Consensus MFE -20.73
Energy contribution -20.48
Covariance contribution -0.25
Combinations/Pair 1.09
Mean z-score -1.25
Structure conservation index 0.93
SVM decision value 0.83
SVM RNA-class probability 0.862426
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11308527 119 + 22407834
UGCUGAAUUUAAAUGAAAAUGAAUUCAAUAUUGCAUUUUCACGCCGAAAUGCUUCCAAAAACAGAUUUUUCAUUUACACUUUCUGAAUGG-CGCAAUCCGGAUUACGUGUCCCACGGGCC
.(((.........(((((((((((.....))).))))))))..(((...(((..(((....((((................))))..)))-.)))...)))....((((...))))))). ( -21.19)
>DroVir_CAF1 27133 112 + 1
UGUUGAAUUUAAA------UGAAUUCAAUAUUGCAUUUUCACGCUAAAAUGCUUCCAAAAACAGAUUUUUCAUUUACACUUUCUGAAUGG-UAAAAUCCGGAUUACGUAUCCCACGGGC-
((((((((((...------.))))))))))..(((((((......))))))).(((.......(((((((((((((.......)))))))-.)))))).((((.....))))...))).- ( -24.50)
>DroGri_CAF1 32934 112 + 1
UGUUGAAUUUAAA------UGAAUUCAAUAUUGCAUUUUCACGCUAAAAUGCUUCCAAAAACAGAUUUUUCAUUUACACUUUCUGAAUGG-UAAAAUCCGGAUUACGUAUCCCACGGGC-
((((((((((...------.))))))))))..(((((((......))))))).(((.......(((((((((((((.......)))))))-.)))))).((((.....))))...))).- ( -24.50)
>DroWil_CAF1 37630 113 + 1
UGGUGAAUUUAAA------UGAAUUCAAUAUUGCAUUUUCACGCUAAAAUGCUUCCAAAAACAGAUUUUUCAUUUACACUUUCUGAAUGGGUAAAAUCCGGAUUACGUAUCCCACGGGC-
...(((((((...------.))))))).....(((((((......))))))).(((.......(((((((((((((.......)))))))..)))))).((((.....))))...))).- ( -20.30)
>DroMoj_CAF1 38875 112 + 1
UGCUGAAUUUAAA------UGAAUUCAAUAUUGCAUUUUCACGCUAAAAUGCUUCCAAAAACAGAUUUUUCAUUUACACUUUCUGAAUGG-UAAAAUCCGGAUUACGUAUCCCACGGGC-
...(((((((...------.))))))).....(((((((......))))))).(((.......(((((((((((((.......)))))))-.)))))).((((.....))))...))).- ( -21.50)
>DroAna_CAF1 25922 119 + 1
UGGUGAAUUUAAAUGAAAAUGAAUUCAAUAUUGCAUUUUCACGCCGAAAUGCUUCCAAAAACAGAUUUUUCAUUUACACUUUCUGAAUGG-CGCAAUCCGGAUUACGUAUCCCACGGGCC
.(((.........(((((((((((.....))).))))))))..(((...(((..(((....((((................))))..)))-.)))....((((.....))))..)))))) ( -21.89)
>consensus
UGCUGAAUUUAAA______UGAAUUCAAUAUUGCAUUUUCACGCUAAAAUGCUUCCAAAAACAGAUUUUUCAUUUACACUUUCUGAAUGG_UAAAAUCCGGAUUACGUAUCCCACGGGC_
...((((((((........)))))))).....(((((((......))))))).(((.......(((((((((((((.......)))))))..)))))).((((.....))))...))).. (-20.73 = -20.48 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:09 2006