| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,307,373 – 11,307,465 |
| Length | 92 |
| Max. P | 0.551991 |
| Location | 11,307,373 – 11,307,465 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 80.41 |
| Mean single sequence MFE | -28.27 |
| Consensus MFE | -20.47 |
| Energy contribution | -20.88 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.16 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.551991 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11307373 92 + 22407834 UUGAUCCACUGUGCC-UUCUGCUUGCAACAAACGUGGAUCGU-----CGAUCUAGCCGAUCGGCCAGCGAAAUAUGAUUGCUGUUUGGCAUGGACGAA ..((((((((((((.-........)).)))...))))))).(-----((.(((((((((.....((((((.......)))))).))))).))))))). ( -29.50) >DroSec_CAF1 27011 92 + 1 UUAAUCCACUGUGCC-UUCUGCUUGCCACAAACGCGGAUCGU-----CGAUCUAGCCGAUCGGCCAGCGAAAUAUGAUUGCUGUUUGUCAUGGACGAA ....(((.(((((.(-........).))))...).)))((((-----(((((.....))))(((((((((.......))))))...)))...))))). ( -23.50) >DroSim_CAF1 26960 92 + 1 UUAAUCCACUGUGCC-UUCUGCUUGCCACAAACGCGGAUCGU-----CGAUCUAGCCGAUCGGCCAGCGAAAUAUGAUUGCUGUUUGGCAUGGACGAA ........(((((((-.(((((((......)).)))))..((-----(((((.....)))))))((((((.......))))))...)))))))..... ( -29.40) >DroEre_CAF1 28916 91 + 1 UUGAUCCACUGUGCC-UUCCG-UUGCCCCAAACGCGGAUCGU-----CGAUCUAGCCGAUCGGCCAGCGAAAUAUGAUUGCUGUUUGGCAUGGACGGA ....(((.(((((((-.((((-(..........)))))..((-----(((((.....)))))))((((((.......))))))...)))))))..))) ( -30.80) >DroYak_CAF1 27125 77 + 1 -UGACCCACUGUGCC-UU--------------CGCGGAUUGU-----CUAUCUAGCCGAUCGGCCAGCGAAAUAUGAUUGCUGUUUGGCAUGGAAGAA -.......(((((((-..--------------.((.(((((.-----((....)).))))).))((((((.......))))))...)))))))..... ( -24.50) >DroPer_CAF1 39061 93 + 1 UUGUGCCACUGUGCCCACCUCCUGGUCUUGAGAAUGGAUCGUCGCGUCGAUCUAGUCG--CGGCGGGCAAAAUAUGAUUACUGUUUGGCAGGGAC--- ((.((((....(((((.......(((((.......)))))((((((.(......).))--)))))))))(((((.......))))))))).))..--- ( -31.90) >consensus UUGAUCCACUGUGCC_UUCUGCUUGCCACAAACGCGGAUCGU_____CGAUCUAGCCGAUCGGCCAGCGAAAUAUGAUUGCUGUUUGGCAUGGACGAA ........(((((((....................((((((......)))))).(((....)))((((((.......))))))...)))))))..... (-20.47 = -20.88 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:08 2006