Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,304,662 – 11,304,762 |
Length | 100 |
Max. P | 0.740897 |
Location | 11,304,662 – 11,304,762 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.23 |
Mean single sequence MFE | -28.44 |
Consensus MFE | -20.41 |
Energy contribution | -20.27 |
Covariance contribution | -0.14 |
Combinations/Pair | 1.04 |
Mean z-score | -1.49 |
Structure conservation index | 0.72 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.740897 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11304662 100 + 22407834 --------CA--CGUCAGUUGGACGCC-GUGUUUUGUCUAUCAUAAUGAGUGGCAGGCGGACAUUUGGACAUAAUUGUUCAAUUAUUUUGUUACUUAUUGCCUGCCA---------GCUC --------..--.....(.((((((..-......)))))).).....((((((((((((((((.(((((((....)))))))......))))......)))))))))---------.))) ( -29.70) >DroVir_CAF1 23580 106 + 1 -------------AUCGGCCGGACGCC-GUCUUUUGUCUAUCAUAAUGAGUGGCAGGCGGACAUUUGGACAUAAUUGUUCAAUUAUUUUGUUACUUAUUGCCUAGGACUGUGCCUAGUUC -------------..((((.....)))-)..............((((((((((((((.......(((((((....)))))))....)))))))))))))).(((((......)))))... ( -28.60) >DroGri_CAF1 28436 107 + 1 ------------CGUCAGUCGGACGCU-GUGUUUUGUCUAUCAUAAUGAGUGGCAGGCGGACAUUUGGACAUAAUUGUUCAAUUAUUUUGUUACUUAUUGCCAGGGAUUGUGCGUAGUUU ------------.(((.....)))(((-((((...((((....((((((((((((((.......(((((((....)))))))....))))))))))))))....))))...))))))).. ( -29.40) >DroWil_CAF1 34242 107 + 1 CUAGCCUUGC--CGUCAUUUGGACGCC-GUGUUUUGUCUAUCAUAAUGAGUGGCAGUCGGACAUUUGGACAUAAUUGUUCAAUUAUUUUGUUACUUAUUGCCAUUCU----------AUC ..(((..((.--((((.....)))).)-).)))..............((((((((((..((((.(((((((....)))))))......))))....)))))))))).----------... ( -26.30) >DroMoj_CAF1 33350 109 + 1 ---------C--CGUCGGACGGACGCCAGAGUUUUGUCUAUCAUAAUGAGUGGCAGGCGGACAUUUGGACAUAAUUGUUCAAUUAUUUUGUUACUUAUUGCCGGGCACAGAGCUUAAUGC ---------.--((((.....))))...(((((((((((....((((((((((((((.......(((((((....)))))))....))))))))))))))...)).)))))))))..... ( -32.20) >DroPer_CAF1 35488 102 + 1 --------CCGUCGUCAGUCGGACGCC-GUGUUUUGUCCAUCAUAAUGAGUGGCAGUCGGACAUUUGGACAUAAUUGUUCAAUUAUUUUGUUACUUAUUGCUUGUCU---------UCAG --------..(..(.(((..(((((..-......)))))....(((((((((((((........(((((((....))))))).....))))))))))))).))).).---------.).. ( -24.42) >consensus _________C__CGUCAGUCGGACGCC_GUGUUUUGUCUAUCAUAAUGAGUGGCAGGCGGACAUUUGGACAUAAUUGUUCAAUUAUUUUGUUACUUAUUGCCUGGCA_________GUUC ....................(((((.........)))))....(((((((((((((........(((((((....))))))).....))))))))))))).................... (-20.41 = -20.27 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:07 2006