Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,302,303 – 11,302,393 |
Length | 90 |
Max. P | 0.824622 |
Location | 11,302,303 – 11,302,393 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 80.25 |
Mean single sequence MFE | -19.25 |
Consensus MFE | -12.57 |
Energy contribution | -13.16 |
Covariance contribution | 0.58 |
Combinations/Pair | 1.14 |
Mean z-score | -1.93 |
Structure conservation index | 0.65 |
SVM decision value | 0.69 |
SVM RNA-class probability | 0.824622 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11302303 90 + 22407834 UAAUUUCUGGCACACUUCAAGUGCAAAUGCCAUUAAGUAAUAUGCAAACAAGGGUGGCU------------CCACCCCCGAAACCACCGCAUUCCA--CCCUUU .......((((((((.....)))....)))))....((...((((......(((((...------------.)))))..(....)...))))...)--)..... ( -19.00) >DroPse_CAF1 31767 95 + 1 UAAUUUCUGGCACACUUCAAGUGCAAAUGCCAUUAAGUAAUAUGCAAACAAGGGUGGCUAUCCC-------CCCUCCCCGUGCCCCCCGCACCCCA--CCCCGU .......((((((((.....)))....)))))...................((((((.......-------........((((.....)))).)))--)))... ( -19.59) >DroEre_CAF1 23846 90 + 1 UAAUUUCUGGCACACUUCAAGUGCAAAUGCCAUUAAGUAAUAUGCAAACAAGGGUGGCU------------CCACCCCCGAAACCACCGAAUUCCA--CCCUUU ...((((((((((((.....)))....)))))...................(((((...------------.)))))..)))).............--...... ( -18.00) >DroYak_CAF1 21777 92 + 1 UAAUUUCUGGCACACUUCAAGUGCAAAUGCCAUUAAGUAAUAUGCAAACAAGGGUGGCU------------CCACCCCCGAAACCACAGAAUUCCAUCCCCUUU ....(((((((((.......))))...(((.((........))))).....(((((...------------.))))).........)))))............. ( -19.50) >DroAna_CAF1 20328 92 + 1 UAAUUUCUGGCACACUUCAAGUGCAAAUGCCAUUAAGUAAUAUGCAAACAAGGGUGGCUAUCCUGGCCAUCCCACCCCCGAG----------UCAA--CCCUCC .......((((((((.....)))....)))))...................((((((((.....)))))))).......(((----------....--..))). ( -21.60) >DroPer_CAF1 32136 84 + 1 UAAUUUCUGGCACACUUCAAGUGCAAAUGCCAUUAAGUAAUAUGCAAACAAGGGUGGCUAUCCC-------CU-----------CCCCGCCCCCCG--CCCCGU ........(((..........((((..(((......)))...)))).....(((.(((......-------..-----------....))).))))--)).... ( -17.80) >consensus UAAUUUCUGGCACACUUCAAGUGCAAAUGCCAUUAAGUAAUAUGCAAACAAGGGUGGCU____________CCACCCCCGAAACCACCGCAUUCCA__CCCUUU .......((((((((.....)))....)))))...................((((((..............))))))........................... (-12.57 = -13.16 + 0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:05 2006