Locus 3855

Sequence ID 2L_DroMel_CAF1
Location 11,293,157 – 11,293,254
Length 97
Max. P 0.694705
window6073

overview

Window 3

Location 11,293,157 – 11,293,254
Length 97
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 73.13
Mean single sequence MFE -15.93
Consensus MFE -5.62
Energy contribution -6.26
Covariance contribution 0.64
Combinations/Pair 1.08
Mean z-score -1.80
Structure conservation index 0.35
SVM decision value 0.34
SVM RNA-class probability 0.694705
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11293157 97 + 22407834
GGCUCCAAUCCAAUUCCAAUCCCAUUCCCAUUCGCAGUGCCAGUGCCACUGCCACCCAACCCCAGGCUGACAUUAAAAUGCCUUUCGAACAAGGAUA
.......((((......................((((((.......))))))...........((((............)))).........)))). ( -16.40)
>DroPse_CAF1 12460 87 + 1
GGCACCACCGAAAAACCGUGCCCCAAGCCACUC----------UCCCCCUCCUCCCCACUCCAAGGCUGGCAUUAAAAUGCCUUUCGAACAAGGAUA
(((((............)))))((.((((....----------.....................))))(((((....)))))..........))... ( -17.11)
>DroEre_CAF1 14999 82 + 1
GGCUCCAAUCCAAUUCCAAUGCCAAUGCCAUUC------------CCACUGCCACCCAACCA---ACUGGCAUUAAAAUGCCUUUCGAACAAGGAUA
(((.................)))(((((((...------------.................---..)))))))......((((......))))... ( -11.98)
>DroYak_CAF1 12513 85 + 1
GGCUCCAAUCCAAUUCCAAUCCCAUUCCCAUUU------------CCAGUGCCACCCAACCGCUGGUUGGCAUUAAAAUGCCUUUCGAACAAGGAUA
............................(((((------------..(((((((.(((.....))).))))))).)))))((((......))))... ( -16.90)
>DroPer_CAF1 12408 84 + 1
GGCACCACCGAAAAACCGUGCCCCAAGCCACAC----------CCCCC---CUCCCCACUCCAAGGCUGGCAUUAAAAUGCCUUUCGAACAAGGAUA
(((((............)))))((.((((....----------.....---.............))))(((((....)))))..........))... ( -17.25)
>consensus
GGCUCCAAUCCAAUUCCAAUCCCAAUGCCAUUC____________CCACUGCCACCCAACCCAAGGCUGGCAUUAAAAUGCCUUUCGAACAAGGAUA
(((.......................)))..........................((.......((..(((((....)))))..))......))... ( -5.62 =  -6.26 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:05 2006