Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,290,593 – 11,290,689 |
Length | 96 |
Max. P | 0.676460 |
Location | 11,290,593 – 11,290,689 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 91.62 |
Mean single sequence MFE | -20.28 |
Consensus MFE | -14.92 |
Energy contribution | -15.28 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.10 |
Mean z-score | -1.99 |
Structure conservation index | 0.74 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.676460 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11290593 96 + 22407834 AAUUAUGAUAAGUAGCUUCAUUAUUU-UUCUCUUCUUUUGAGCAAAAUUUAAUGAUCCUGCCAGUGGAUCGGAGCACUCAUGACACCUCUC-CCAUAC ..((((((...((.(((((...((((-(.(((.......))).))))).....(((((.......))))))))))))))))))........-...... ( -20.80) >DroSec_CAF1 10022 96 + 1 AAUUAUGAUAAGUAGCUUAAUUAUUU-UUCUCCUCUUUUGAGCAAAAUUUAAUGAUCCUGCCAGAGGAUCGGAGCACUCAUGACACCUCUC-CCAUAC ..((((((...((.((((.((((..(-((...(((....)))..)))..))))((((((.....)))))).))))))))))))........-...... ( -18.80) >DroSim_CAF1 9978 96 + 1 AAUUAUGAUAAGUAGCUUAAUUAUUU-UUCUCCUCUUUUGAGCAAAAUUUAAUGAUCCUGCCAGAGGAUCGGAGCACUCAUGACACCUCUC-CCAUAC ..((((((...((.((((.((((..(-((...(((....)))..)))..))))((((((.....)))))).))))))))))))........-...... ( -18.80) >DroEre_CAF1 12357 95 + 1 AAUUAUGAUAAGUAGCUUAAUUAUUU-UGCUCCUCCUUUGUGCAA-CUUUAAUGAUCCUGCCAGAGGAACGGGAGACUCAUGACACCUCUC-CCAUAC ...........(.(((..........-.))).)(((((((.(((.-............))))))))))..((((((...........))))-)).... ( -21.22) >DroYak_CAF1 9904 97 + 1 AAUUAUGAUAAGUAGCUUAAUUAUUUGUUCUCCUCCUUUGUGCAA-UUUUAAUGAUCCUGCCAGAGGAACGGGAGACUCAUGACACCUCACCCCAAAC ..(((((((((((((.....))))))).((((((((((((.((((-((.....)))..))))))))))...))))).))))))............... ( -21.80) >consensus AAUUAUGAUAAGUAGCUUAAUUAUUU_UUCUCCUCUUUUGAGCAAAAUUUAAUGAUCCUGCCAGAGGAUCGGAGCACUCAUGACACCUCUC_CCAUAC ..((((((.((((((.....))))))...(((((((((((.(((..(((....)))..))))))))))..))))...))))))............... (-14.92 = -15.28 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:02 2006