Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,201,984 – 1,202,088 |
Length | 104 |
Max. P | 0.774928 |
Location | 1,201,984 – 1,202,088 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 81.78 |
Mean single sequence MFE | -33.20 |
Consensus MFE | -21.39 |
Energy contribution | -22.03 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.31 |
Mean z-score | -1.80 |
Structure conservation index | 0.64 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.630186 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1201984 104 + 22407834 AUGCGAUU---UUCGCAAUAGACCCACCCCGUUUGUGACCGCAAUCACUCAGGCGUUUAAUAAUUGACUGCAUCUGCGGUCGAAUCCCAAUCGAAUCGGGGUGGGUG .((((...---..))))....(((((((((((((((((.(((..........))).)))....((((((((....))))))))........)))).)))))))))). ( -42.50) >DroSec_CAF1 16313 104 + 1 AUGCGAUU---UUCGCAAUGGACCCACCCCGUUUGUGACCGCAAUCACUCAGGCGUUUAAUAAUUGACUGCAUCUGCGGUCGAAUCCCAAUCGAAUCGUGGUGGGUA .((((...---..))))....(((((((.(((((((((.(((..........))).)))....((((((((....))))))))........)))).)).))))))). ( -35.40) >DroSim_CAF1 19034 104 + 1 AUGCGAUU---UUCGCAAUGGACCCACCCCGUUUGUGACCGCAAUCACUCAGGCGUUUAAUAAUUGACUCCAUCUGCGGUCGAAUCCCAAUCGAAUCGUGGUGGGUA .((((...---..))))....(((((((.((((((((((((((........((.(((........))).))...)))))))).........)))).)).))))))). ( -34.00) >DroEre_CAF1 18204 99 + 1 ---CGAGU---UUCGCAGUAGACCCGCCCCUUU-GCGACCGCAAUCACUCAGGCGUUUAAUAAUUGACUGCAUCUGCGGUUCAAUCCC-AUCGAAUCGGGGUGGGCG ---.....---.........(.((((((((...-.(((.(((..........))).......(((((((((....)))).)))))...-.)))....))))))))). ( -30.70) >DroYak_CAF1 18957 104 + 1 AUGCGAGU---UUCGCAAUAGAGCCACCCCUUUGGCGACCGCAAUCACUCAGGCGUUUAAUAAUUGACUGCAUCUGCGGUUCAAUCGCAAUCGAAUCGGGGUGGGUG .((((...---..))))....(.(((((((((((((((.(((..........)))........((((((((....)))).))))))))...))))..))))))).). ( -34.00) >DroPer_CAF1 31821 107 + 1 AUCUGUCUUGAAACGCACUGUACCCCUUCCUCUUCAGCCCGCAAUCACUCAACCGUUUAAUAAUUGACUGCAUCUGUAUUGGAUUCCAGAUCGAUCCAAGGGGAAGG ........................((((((((..(((...(((.(((.................))).)))..)))..(((((((.......))))))))))))))) ( -22.63) >consensus AUGCGAUU___UUCGCAAUAGACCCACCCCGUUUGUGACCGCAAUCACUCAGGCGUUUAAUAAUUGACUGCAUCUGCGGUCGAAUCCCAAUCGAAUCGGGGUGGGUG .(((((......)))))....(((((((........(((((((((((.((((...........)))).)).)).)))))))...((......)).....))))))). (-21.39 = -22.03 + 0.64)
Location | 1,201,984 – 1,202,088 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 81.78 |
Mean single sequence MFE | -35.18 |
Consensus MFE | -24.49 |
Energy contribution | -25.97 |
Covariance contribution | 1.48 |
Combinations/Pair | 1.30 |
Mean z-score | -1.98 |
Structure conservation index | 0.70 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.774928 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1201984 104 - 22407834 CACCCACCCCGAUUCGAUUGGGAUUCGACCGCAGAUGCAGUCAAUUAUUAAACGCCUGAGUGAUUGCGGUCACAAACGGGGUGGGUCUAUUGCGAA---AAUCGCAU .((((((((((((((.....))))..((((((((...((.(((.............))).)).)))))))).....))))))))))....((((..---...)))). ( -43.72) >DroSec_CAF1 16313 104 - 1 UACCCACCACGAUUCGAUUGGGAUUCGACCGCAGAUGCAGUCAAUUAUUAAACGCCUGAGUGAUUGCGGUCACAAACGGGGUGGGUCCAUUGCGAA---AAUCGCAU .(((((((.((((((.....))))..((((((((...((.(((.............))).)).)))))))).....)).)))))))....((((..---...)))). ( -36.62) >DroSim_CAF1 19034 104 - 1 UACCCACCACGAUUCGAUUGGGAUUCGACCGCAGAUGGAGUCAAUUAUUAAACGCCUGAGUGAUUGCGGUCACAAACGGGGUGGGUCCAUUGCGAA---AAUCGCAU .(((((((.((((((.....))))..((((((((((...)))..........(((....)))..))))))).....)).)))))))....((((..---...)))). ( -33.90) >DroEre_CAF1 18204 99 - 1 CGCCCACCCCGAUUCGAU-GGGAUUGAACCGCAGAUGCAGUCAAUUAUUAAACGCCUGAGUGAUUGCGGUCGC-AAAGGGGCGGGUCUACUGCGAA---ACUCG--- .((((.(((((((((...-.)))))((.((((((...((.(((.............))).)).))))))))..-...)))).))))..........---.....--- ( -31.02) >DroYak_CAF1 18957 104 - 1 CACCCACCCCGAUUCGAUUGCGAUUGAACCGCAGAUGCAGUCAAUUAUUAAACGCCUGAGUGAUUGCGGUCGCCAAAGGGGUGGCUCUAUUGCGAA---ACUCGCAU ...(((((((....(((((((((((((...((....))..))))))......(((....)))...))))))).....)))))))......((((..---...)))). ( -36.60) >DroPer_CAF1 31821 107 - 1 CCUUCCCCUUGGAUCGAUCUGGAAUCCAAUACAGAUGCAGUCAAUUAUUAAACGGUUGAGUGAUUGCGGGCUGAAGAGGAAGGGGUACAGUGCGUUUCAAGACAGAU ((((((.((((((((......).))))....(((.((((((((....((((....)))).))))))))..)))))).))))))..........(((....))).... ( -29.20) >consensus CACCCACCCCGAUUCGAUUGGGAUUCGACCGCAGAUGCAGUCAAUUAUUAAACGCCUGAGUGAUUGCGGUCACAAAAGGGGUGGGUCCAUUGCGAA___AAUCGCAU .(((((((((((.((......)).)).(((((((...((.(((.............))).)).))))))).......)))))))))....(((((......))))). (-24.49 = -25.97 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:36 2006