Locus 3849

Sequence ID 2L_DroMel_CAF1
Location 11,274,845 – 11,274,958
Length 113
Max. P 0.837267
window6061

overview

Window 1

Location 11,274,845 – 11,274,958
Length 113
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 72.80
Mean single sequence MFE -26.98
Consensus MFE -8.60
Energy contribution -8.20
Covariance contribution -0.40
Combinations/Pair 1.62
Mean z-score -1.89
Structure conservation index 0.32
SVM decision value 0.74
SVM RNA-class probability 0.837267
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11274845 113 + 22407834
AAAAGAUCUCUUCAAGAAAAGAUUACU-CAGGCCGAGAAGGAAAGAAACGAAUUGGCUGUCCGACACAAGGCAGAGCUUGAAAAAAUCAGGGAAACGCU------GAAGGAGAAGGAAUC
....(((..((((..............-..((((((...(........)...)))))).(((....((((......))))......(((((....).))------)).)))))))..))) ( -28.50)
>DroSec_CAF1 106936 113 + 1
AAAGGAUCUCUUCAAGAAAAGAUUACU-CAGGCCGAGAAGGAAAGAAAUGAAUUGGCUGCCCGACACAAGGCAGAGCUUGAAAAAAUCAAUGAAACGCU------GAAGGAGAAGGAAUC
....(((..((((.......((((..(-((((((((...(........)...))).(((((........))))).))))))...)))).......(...------...)..))))..))) ( -21.50)
>DroEre_CAF1 109358 113 + 1
AAAGAUAAGCUUCAAGAUAAGGUUACC-CAGGCCGAAAAGGAAAGGAAUGAAUUGAUUGCCGUACACAAGGCAGAGCUGGAAGCAAUCAGGGAAACUCU------GAAGAAGAAGGAAUC
........(((((.((..........(-(...((.....))...))..........(((((........)))))..)).)))))..(((((....).))------))............. ( -25.20)
>DroYak_CAF1 111005 113 + 1
AAAGGAUCUCUUCAAGAAAAGAUUACU-CAGGCCGAGAAGGACAGAACUGAAUUGGUUGCCCUGCACAAGGCAGAGCUGGAAAAAAUCAGGGAAACUCU------GAAGGAGAAGGAAUC
....(((..((((.............(-(.((((((..((.......))...))))))((.((((.....)))).))..)).....(((((....).))------))....))))..))) ( -28.00)
>DroAna_CAF1 102403 120 + 1
GAAGGACAACCUCCGGAAGGAAUUGGGCGAAGCUGAGAAGCAGAGCAAAGAGACUGUUUCAGUUCAUCAGGAGCAACUGAAGGAGAUCAAAGAUUUGCUAAGCCAAAAGCUGCAGGAAUC
.........(((((....)))....(((...(((....)))..((((((..((((.(((((((((.......).)))))))).)).)).....))))))..)))..........)).... ( -31.70)
>consensus
AAAGGAUCUCUUCAAGAAAAGAUUACU_CAGGCCGAGAAGGAAAGAAAUGAAUUGGUUGCCCUACACAAGGCAGAGCUGGAAAAAAUCAGGGAAACGCU______GAAGGAGAAGGAAUC
..........((((((................((.....))...............(((((........)))))..))))))...................................... ( -8.60 =  -8.20 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:53 2006