| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,271,656 – 11,271,756 |
| Length | 100 |
| Max. P | 0.888469 |
| Location | 11,271,656 – 11,271,756 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 69.29 |
| Mean single sequence MFE | -32.55 |
| Consensus MFE | -16.22 |
| Energy contribution | -17.89 |
| Covariance contribution | 1.67 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.50 |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.888469 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11271656 100 - 22407834 GCAC-GCCGCACUCGUCUCCACCUCGUUU-UUAGUUCAGGUGUCAGGUGAGUGCGCGCAAGAGGUGAGUUGGUAUGUUCAAAAUGCGCAAAA----UUGCUUACUU ....-(((((((((..((.(((((.(...-.....).)))))..))..))))))).))...((((((((((((((.......)))).))...----..)))))))) ( -33.20) >DroSec_CAF1 103714 90 - 1 GCUC----GCGCUCGUCUCCACCUCGUUUUUUAGUUGAGGUGUCAGGUGAGUGCGCGCCAGAGGUGAGUUGGCAUGUUCAAAAUGAGCU------------AACUU ((.(----((((((..((.(((((((.........)))))))..))..))))))).)).......((((((((.............)))------------))))) ( -35.82) >DroSim_CAF1 111309 84 - 1 GCUC----GCGCUCGUCUCCACCUCGUUU-UUAGUUGAGGUGUCAGGUGAGUGCGCGCCAGAGGUGAGUUGGCAUGUUCAAAAUGCGCA----------------- ((.(----((((((..((.(((((((...-.....)))))))..))..)))))))((((...)))).....((((.......)))))).----------------- ( -33.70) >DroEre_CAF1 105975 104 - 1 GCAC-GCCGCGCUCGGCUCCACCUCGUUU-UUGAAUCAGGUGUCAGAUUAGUGCGCGCCAGAGGUGAGUUGGCAUAUUCAAAAUGCGCGGUGUGCAUUGCUGACUU ((((-((((((((((((((.((((((((.-...)))..(((((((......)).))))).))))))))))))............)))))))))))........... ( -41.90) >DroYak_CAF1 107643 99 - 1 GCAC-GCCACACUCGACUCCACCUCGUUUUUUAAAUCAGGUGUCAGGUGAAUGCGCGCCAGAGGUGAGUUGGUAUAUUCAAAAUGCGCAACAUG------UGACUC .(((-(.(((.(((.....(((((.(((.....))).)))))...((((......)))).)))))).((((((((.......)))).)))).))------)).... ( -26.40) >DroAna_CAF1 99195 85 - 1 GUGCCACGGCACUGUUCACCACUUUG----CCCACACAGGUGCCAGGUGAGCGGCCAACAGAGGUGGAUAACAAGAUUCAAACUACUUC----------------- ((((....))))((((((((.....(----(((.....)).))..)))))))).......(((((((...............)))))))----------------- ( -24.26) >consensus GCAC_GCCGCACUCGUCUCCACCUCGUUU_UUAAUUCAGGUGUCAGGUGAGUGCGCGCCAGAGGUGAGUUGGCAUAUUCAAAAUGCGCA_____________ACUU ........((((((((((.(((((.............)))))..))))))))))((((......(((((......)))))....)))).................. (-16.22 = -17.89 + 1.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:52 2006