Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,267,295 – 11,267,415 |
Length | 120 |
Max. P | 0.538562 |
Location | 11,267,295 – 11,267,415 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.44 |
Mean single sequence MFE | -33.59 |
Consensus MFE | -23.70 |
Energy contribution | -24.02 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.37 |
Mean z-score | -1.18 |
Structure conservation index | 0.71 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.538562 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11267295 120 + 22407834 UAUCCAGGGAACCCAAAAUGUUUAUGGUCUUUGGAAUGUUGUCCCAUCGUUUGCCUGCAUUUGAAGUGUGAAAAAACACUGGUUUUGGAAGGUGUGAGACCUUUGGAAAUUGGUCAAUUC ..((((((((..(((.........)))))))))))..((((.((..(((..((....))..)))(((((......)))))((((((.((((((.....)))))).)))))))).)))).. ( -32.50) >DroSec_CAF1 99144 120 + 1 UAUCCAGGGAACCCAAAAUGUUUAUAGUCUUUGGAAUGUUGUCCCAUCGUUUGCCGGCAUUUGAAGUGGGAAAAAACUCUGGUUUUGGAAGGUGGGAGGCCUUUGGAAAUUGGCCAAUUC ..((((((((.................))))))))......(((((((((((.((.((.......)).))...))))(((......))).)))))))((((..(....)..))))..... ( -35.03) >DroSim_CAF1 106115 120 + 1 UAUCCAGGGAACCUAAAAUGUUUAUAGUCUUCGGAAUGUUGUCCCAUCGUUUGCCGGCAUUUGAAGUGGGAAAAAACACUGGUUUUGGAAGGUGGGAGGCCUUUGGAAAUUGGCCAAUUC ..((((..(((((..............((....)).((((.((((((((..((....))..)))..)))))...))))..)))))))))........((((..(....)..))))..... ( -33.10) >DroEre_CAF1 101331 120 + 1 UAUUCAGGGAUCCCAAAAUGUUGAUGGUCUUAGGAACGUUGUCCCAUCGUUUGCCAGCAUUUGAAGUGGGAAAAAACACUGGUUUUGGAAGGUGAGACGCCUUUGAAAAUUUGACAAGUC ..(((..(((((.(((....)))..)))))..)))..(((.((((((((..((....))..)))..)))))...))).(..(((((.(((((((...))))))).)))))..)....... ( -30.40) >DroYak_CAF1 102891 120 + 1 UAUCUAGGGAUCCCAAAAUGUUGAUGGUCUUUGGAAUGUUGUCCCAUCGUUUGGCAGCAUUUGAAGUGGGAAAAAACACUGGUUUUGGAAGGUGGGACACCUUUGGAAAUUGGACAUGUC ..((((((((((.(((....)))..)))))))))).((((.((((((((..((....))..)))..)))))...))))(..(((((.(((((((...))))))).)))))..)....... ( -38.30) >DroAna_CAF1 93113 118 + 1 AGGCCAACGAUUGCAGGAUAUUGAUCGUCUUUGGAGCCUUGUCCAGUCGACCGGAAAUAUGGGAAGUGGGGAAAAACGUGGGCUUCGGUAGAUGAGAGAGCUUCGAAAGGGGAGGAAG-- ...((...............((..(((((((((((((((..(((...(..(((......)))...)...))).......))))))))).))))))..)).((((....)))).))...-- ( -32.20) >consensus UAUCCAGGGAACCCAAAAUGUUGAUGGUCUUUGGAAUGUUGUCCCAUCGUUUGCCAGCAUUUGAAGUGGGAAAAAACACUGGUUUUGGAAGGUGGGAGACCUUUGGAAAUUGGACAAGUC ..((((((((.((............))))))))))..(((.((((((((..((....))..)))..)))))...))).(..(((((.((((((.....)))))).)))))..)....... (-23.70 = -24.02 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:51 2006