Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,253,401 – 11,253,495 |
Length | 94 |
Max. P | 0.986510 |
Location | 11,253,401 – 11,253,495 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 88.98 |
Mean single sequence MFE | -21.39 |
Consensus MFE | -18.38 |
Energy contribution | -18.13 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.14 |
Mean z-score | -3.00 |
Structure conservation index | 0.86 |
SVM decision value | 2.04 |
SVM RNA-class probability | 0.986510 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11253401 94 - 22407834 GUCUUAU-UUUUGGCCACCUCGGUGGCUGUGCAUAAUUAAUGAAAUAUAAAAUGCAAAACCUAAUUUUUCCUAAUAAUUAUGCAUCAUAAAUGUC ....(((-((.(((((((....))))).(((((((((((..((((.....................))))....))))))))))))).))))).. ( -20.80) >DroSec_CAF1 85244 94 - 1 GUCUUAU-UUUUGGCCACCUCGGUGGCUGUGCAUAAUUAAUGAAAUAUAAAAUGCAAAACCUAAUUUUUCCUAAUAAUUAUGCAUCUAAAAUGUC ....(((-(((.((((((....))))))(((((((((((..((((.....................))))....)))))))))))..)))))).. ( -20.80) >DroSim_CAF1 86391 94 - 1 GUCUUAU-UUUUGGCCACCUCGGUGGCUGUGCAUAAUUAAUGAAAUAUAAAAUGCAAAACCUAAUUUUUCCUAAUAAUUAUGCAUUAUAAAUAUC .......-....((((((....))))))(((((((((((..((((.....................))))....))))))))))).......... ( -20.50) >DroEre_CAF1 87316 94 - 1 GACUUAU-UUUUGGCCACCUCUGUGGCUGUGCAUAAUUAAUGAAAUAUAAAAUGCAAAACCUCAUUUUUGCCAAUAAUUAUGCAUCAUAACUGUC (((....-....((((((....))))))(((((((((((.((...........((((((......)))))))).))))))))))).......))) ( -23.70) >DroYak_CAF1 88822 94 - 1 GUCUUAU-UUUUGGCCACCUCUGUGGCUGUGCAUAAUUAAUGAAAUAUGAAAUGCAAAACCUAAUUUUUCAUAAUAAUUAUGCAUCAUAAAUGUC ....(((-((.(((((((....))))).(((((((((((((((((.((...............)).))))))..))))))))))))).))))).. ( -22.06) >DroAna_CAF1 79756 93 - 1 G--UAAUUUCCUAGUCCCUUCGGUGGCUGUGCAUAAUUAAUGAAAUAUAAAAUGCGAAACUCAAUUUUCGCAAAUAAUUAUGCAUCGUAAAAAUU .--.........((((.(....).))))((((((((((((((...)))....(((((((......)))))))..))))))))))).......... ( -20.50) >consensus GUCUUAU_UUUUGGCCACCUCGGUGGCUGUGCAUAAUUAAUGAAAUAUAAAAUGCAAAACCUAAUUUUUCCUAAUAAUUAUGCAUCAUAAAUGUC ............((((((....))))))(((((((((((.........(((((..........)))))......))))))))))).......... (-18.38 = -18.13 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:48 2006