Locus 3843

Sequence ID 2L_DroMel_CAF1
Location 11,251,552 – 11,251,650
Length 98
Max. P 0.513562
window6055

overview

Window 5

Location 11,251,552 – 11,251,650
Length 98
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 90.80
Mean single sequence MFE -20.98
Consensus MFE -17.07
Energy contribution -17.10
Covariance contribution 0.03
Combinations/Pair 1.04
Mean z-score -1.91
Structure conservation index 0.81
SVM decision value -0.04
SVM RNA-class probability 0.513562
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11251552 98 + 22407834
---AAACAC--UCUUAGAAAGUGUAUCUUGAAAGAAAAGUGGAAGAAAGCAAAGCGAACAAGCA-AACUUGUUUGCAAAGUUUAAACAACAUUUCGUUUGGCUU
---..((((--(.......)))))............((((.(((((((.....(((((((((..-..)))))))))...(((.....))).)))).))).)))) ( -21.00)
>DroSec_CAF1 83458 98 + 1
---AAACAC--CCUUUGAAAGUGUAUCUUGAAAGAAAAGUGGAAGAAAGCAAAGCGAACAAGCA-AACUUGUUUGCAAAGUUUAAACAACAUUUCGUUUGGCUU
---.....(--(((((..(((.....)))......)))).))....((((...(((((((((..-..)))))))))......(((((........))))))))) ( -20.10)
>DroSim_CAF1 84616 98 + 1
---AAACAC--CCUUUGAAAGUGUAUCUUGAAAGAAAAGUGGAAGAAAGCAAAGCGAACAAGCA-AACUUGUUUGCAAAGUUUAAACAACAUUUCGUUUGGCUU
---.....(--(((((..(((.....)))......)))).))....((((...(((((((((..-..)))))))))......(((((........))))))))) ( -20.10)
>DroEre_CAF1 85488 98 + 1
---AAGCAC--CCUUCAAAAGUGUAUCUUAAAAGAAAAGUGGAAGAAAGCAGAGCGAACAAGCA-AACUUGUUUGCAAAGUUUAAACAACAUUUCGUUUGGCUU
---..((((--.........))))............((((.(((((((.....(((((((((..-..)))))))))...(((.....))).)))).))).)))) ( -19.50)
>DroYak_CAF1 86908 98 + 1
---AAGCAC--CCCUCGAAAGAGUAUGUUAAAAGAAAAGUGGAAGAAAGCAAAGCGAACAAGCA-AACUUGUUUGCAAAGUUUAAACAACAUUUCGUUUGGCUU
---......--..(((....)))...((((((.((((.((......((((...(((((((((..-..)))))))))...)))).....)).)))).)))))).. ( -24.60)
>DroAna_CAF1 78011 101 + 1
UGGUAGUACCUCCUU--UAAGGGUAUAUCAAAAGAAAAGUGGAAGAAAG-AAAGCGAGCUAGCAAAACUUGUUUGCAAAGUUUAAACAACAUUUCGUUUGGCUU
(((((.(((((....--...))))))))))......((((.(((((((.-...((((((.((.....)).))))))...(((.....))).)))).))).)))) ( -20.60)
>consensus
___AAACAC__CCUUCGAAAGUGUAUCUUAAAAGAAAAGUGGAAGAAAGCAAAGCGAACAAGCA_AACUUGUUUGCAAAGUUUAAACAACAUUUCGUUUGGCUU
....................................((((.(((((((.....(((((((((.....)))))))))...(((.....))).)))).))).)))) (-17.07 = -17.10 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:47 2006