| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,248,439 – 11,248,534 |
| Length | 95 |
| Max. P | 0.822600 |
| Location | 11,248,439 – 11,248,534 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 80.00 |
| Mean single sequence MFE | -14.10 |
| Consensus MFE | -11.16 |
| Energy contribution | -11.20 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.822600 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11248439 95 - 22407834 CUCCUCACUUCGUCU-UUGGCCAAGAUUAUCUCCUUUACUUUUGGUGGCAAGAACUUUUUGCCCGAGCCC--CACCUUCCCACCUCCCCACGUCCCCA-- ...(((.........-...(((((((.((.......)).)))))))(((((((...))))))).)))...--..........................-- ( -14.90) >DroSec_CAF1 80397 97 - 1 CUCCUCACUUCGUCU-UUGGCCAAGAUUAUCUCCUUUACUUUUGGUGGCAAGAACUUUUUGCCCGAGCCC--CACCUUCCCACCUCCCCACGUCUCCAAU ...(((.........-...(((((((.((.......)).)))))))(((((((...))))))).)))...--............................ ( -14.90) >DroYak_CAF1 84534 93 - 1 CUCCUCACUUCGUCU-UUGGCCAAGAUUAUCUCCUUUACUUUUGGUGGCAAGAACUUUUUGCCCUAGCCCCCCACCUCUCCACCUCUCCGCCU------U ...............-...(((((((.((.......)).)))))))(((((((...)))))))..............................------. ( -12.30) >DroAna_CAF1 75003 90 - 1 CUCCUCACUUCGUCU-UUGGCCAAGAUUAUCUCCUUUACUUUUGGUGGCAAGAACUUUUUGCCC---CCC--CACCCCUUCCUCUGUGGUCGUG--C--A .....(((.......-...(((((((.((.......)).)))))))(((((((...))))))).---..(--(((..........))))..)))--.--. ( -16.40) >DroPer_CAF1 103715 90 - 1 CUC-----UUCGUCUCCUGGCCAAGAUUAUCUCCUUUACUUUUGGUGGCAAGAACUUUUUGUGC---CCCUCCCCCUCCCUACUCCUACUCCUCUUCG-- .((-----((.(((....))).)))).................((.((((.((.....)).)))---)))............................-- ( -12.00) >consensus CUCCUCACUUCGUCU_UUGGCCAAGAUUAUCUCCUUUACUUUUGGUGGCAAGAACUUUUUGCCC_AGCCC__CACCUCCCCACCUCUCCACGUC__C___ ...................(((((((.((.......)).)))))))(((((((...)))))))..................................... (-11.16 = -11.20 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:46 2006