Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,235,965 – 11,236,085 |
Length | 120 |
Max. P | 0.660860 |
Location | 11,235,965 – 11,236,085 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.88 |
Mean single sequence MFE | -36.00 |
Consensus MFE | -26.68 |
Energy contribution | -27.97 |
Covariance contribution | 1.28 |
Combinations/Pair | 1.34 |
Mean z-score | -1.14 |
Structure conservation index | 0.74 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.660860 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11235965 120 - 22407834 UAUUAUGCCAUAACCUCACCUCAGCAGAUUCUCGACAUCAUCGCAGCGCACGUCGCGCAGGAUGACUAUCGGGUGCUCGCAGGGAUUGGCCUUGAGCAGCCGGCGGAAGUAGGGGCUGCA ......((((.....((.((((((((....(((((..(((((.(.((((.....)))).))))))...))))))))).).))))).)))).....((((((.((....))...)))))). ( -44.80) >DroVir_CAF1 59771 108 - 1 ------------UGCUCACCUUAGCAGGUUCUCAACAUCAUCGCUCCGUACAUCGCGCAAGAUGACAAUGGGAUGCUCACAAGGAUUGGCCUUGAGCAGCUUGCGAAAGUAUGGGCUGCA ------------.(((((.(((.(((((((((((...(((((....(((.....)))...)))))...)))))((((((..(((.....)))))))))))))))..)))..))))).... ( -35.20) >DroGri_CAF1 92508 108 - 1 ------------UGGUUACCUUAGCAGGUUCUCGACAUCGUCGCUGCGAACGUCGCGCAAGAUGACAAUGGGAUGCUCGCAGGGAUUGGCCUUGAGCAGCUUGCGAAAGUAGGGACUGCA ------------.(((((((((.((..(((((((...(((((..((((.......)))).)))))...))))).))..))))))..)))))....(((((((((....)))))..)))). ( -39.30) >DroWil_CAF1 95842 108 - 1 ------------AACUUACCUCAAUAGAUUCUCCACAUCAUCGCUGCGUACAUCACGCAAUAUGACAAUGGGAUGCUCGCAGGGAUUUGCCUUGAGCAAUUUACGAAAAUAAGGACUACA ------------......(((...((..((((((.(((..(((.(((((.....)))))...)))..))))))((((((.(((......)))))))))......)))..)))))...... ( -24.70) >DroMoj_CAF1 85984 108 - 1 ------------UACUCACCUUAGCAGGUUCUCAACAUCGUCGCUGCGCACAUCGCGCAAUAUGACAAUGGGAUGCUCACAGGGAUUGGCCUUAAGCAGCUUGCGAAAGUAGGGACUGCA ------------...........((((..(((((...((((...(((((.....)))))..))))...)))))((((...(((......)))..)))).(((((....)))))..)))). ( -33.20) >DroAna_CAF1 62847 120 - 1 UAUAGUCCAAUAUCCCUACCUCAGAAGAUUCUCAACAUCGUCGCUGCGCACAUCCCGCAGGAUAACGAUCGGAUGCUCGCAGGGAUUGGCCUUGAGCAGCCGCCGGAAGUAGGGACUGCA ............(((((((.((.................(((.(((((.......))))))))..((..(((.((((((.(((......))))))))).))).)))).)))))))..... ( -38.80) >consensus ____________UACUCACCUCAGCAGAUUCUCAACAUCAUCGCUGCGCACAUCGCGCAAGAUGACAAUGGGAUGCUCGCAGGGAUUGGCCUUGAGCAGCUUGCGAAAGUAGGGACUGCA .......................((((..(((((...(((((...((((.....))))..)))))...)))))((((((.(((......))))))))).(((((....)))))..)))). (-26.68 = -27.97 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:43 2006