Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,200,979 – 1,201,085 |
Length | 106 |
Max. P | 0.803457 |
Location | 1,200,979 – 1,201,085 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 80.17 |
Mean single sequence MFE | -30.96 |
Consensus MFE | -15.86 |
Energy contribution | -17.66 |
Covariance contribution | 1.80 |
Combinations/Pair | 1.09 |
Mean z-score | -2.20 |
Structure conservation index | 0.51 |
SVM decision value | 0.62 |
SVM RNA-class probability | 0.803457 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1200979 106 + 22407834 CAUCCGAUUUACCACGAACCUCCUCACGG------AAACAGCUCCGGCUACAAUCCUCCGCCGCCGCAUGGUCCGUAUCCAUAUGGUCCAGGAUACGUGGCCCCAGGACCUC ..(((......(((((....(((....(.------...).((..((((...........))))..)).(((.(((((....))))).))))))..))))).....))).... ( -31.00) >DroSim_CAF1 18062 106 + 1 CAUCCGAUUUACUACGAACCACCUCACGG------AAACAGCUCCGGCUACAAUCCUCCUCCGCCGCAUGGUCCAUAUCCACAUGGUCCAGGAUACGUGGCCCCAGGACCUC ..(((......................((------(......)))((((((.....((((..((((..(((.......)))..))))..))))...))))))...))).... ( -26.10) >DroEre_CAF1 17222 106 + 1 CAUCCGAUUUAUUACGAGCCGCCUCACGG------AAACAUUUCCGGCUACCAUCCUCCGCCGCCGCAUGGUCCGUAUCCACAUGGGCCAGGUUACGUGGCCCGAGGACCUC ................(((((......(.------...).....)))))....(((((.(((((.((.((((((((......)))))))).))...)))))..))))).... ( -35.50) >DroYak_CAF1 17928 106 + 1 CAUCCAAUCUACUAUGAACCCCCUCAUGG------AAACAGCUCCGGCUACAAUCCUCCACCACCACACGGUCCGUAUCCAUAUGGACCAGGAUAUGUGGCACCAGGACCUC ...........((((((......))))))------....((.(((.(((((((((((............((((((((....))))))))))))).))))))....))).)). ( -32.10) >DroAna_CAF1 16828 109 + 1 CAUCCUAUUUAUUACGAGCCAGGACACGGCCCAGAAAGCGGACCGGGCUACAAUCCGCCUCCUCCUCACGGUCCUCAUC---ACCCACCAGGCUAUGUGGCCCCAGGACCAC ...............(((..((((..(((.((.......)).)))(((........))))))).)))..((((((....---..((((........))))....)))))).. ( -30.10) >consensus CAUCCGAUUUACUACGAACCACCUCACGG______AAACAGCUCCGGCUACAAUCCUCCGCCGCCGCAUGGUCCGUAUCCACAUGGACCAGGAUACGUGGCCCCAGGACCUC ..(((.............((.......))................((((((.(((((............(((((((......))))))))))))..))))))...))).... (-15.86 = -17.66 + 1.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:34 2006