Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,224,846 – 11,224,949 |
Length | 103 |
Max. P | 0.500000 |
Location | 11,224,846 – 11,224,949 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 80.70 |
Mean single sequence MFE | -22.78 |
Consensus MFE | -15.50 |
Energy contribution | -16.06 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.12 |
Mean z-score | -1.22 |
Structure conservation index | 0.68 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11224846 103 + 22407834 GUGAGGUCAGCGAGUUGGGGGGCGUGGCCAUUACUCAAGUUUGUGGAUUUGAAGUAAUAACUCAGUGCGUCAUAAAAAUUUUAAUUGCUUUGGGUU-UCUUCA---G-- ...(((((.((((((((((.(((...)))....))))).))))).)))))((((....(((((((.(((................))).)))))))-.)))).---.-- ( -25.99) >DroVir_CAF1 48589 79 + 1 -----------------AGAGGCGUUGGCAUUACUCAAGUUUGUGGAUUUGAAGUAAUAACUCAGUGCGUCAUAAAAAUUUUAAUUGCUUUGGGUU------------- -----------------.((.(((((((.((((((((((((....)))))).))))))...))))))).)).........................------------- ( -16.40) >DroPse_CAF1 113197 92 + 1 --------------GAGGGGGGCGUGGUCAUUACUCAAGUUUGUGGAUUUGAAGUAAUAACUCAGUGCGUCAUAAAAAUUUUAAUUGCUUUGGGUUUUCCUCA---GUU --------------((((..(((..(((.((((((((((((....)))))).)))))).)))(((.(((................))).))).)))..)))).---... ( -24.89) >DroMoj_CAF1 71761 89 + 1 -----------------AGAGGCGUUGGCAUUACUCAAGUUUGUGGAUUUGAAGUAAUAACUCAGUGCGUCAUAAAAAUUUUAAUUGCUUUGGGUU-G--UUGUUUUUU -----------------.((.(((((((.((((((((((((....)))))).))))))...))))))).))..((((((..(((((......))))-)--..)))))). ( -19.10) >DroAna_CAF1 52655 100 + 1 ---GGGUCAGCUGUGGAGAGGGCGUGGCCAUUACUCAAGUUUGUGGAUUUGAAGUAAUAACUCAGUGCGUCAUAAAAAUUUUAAUUGCUUUGGGUU-UCUUCU---G-- ---.((((((((.(....).))).)))))((((((((((((....)))))).))))))(((((((.(((................))).)))))))-......---.-- ( -25.39) >DroPer_CAF1 76914 92 + 1 --------------GAGGGGGGCGUGGUCAUUACUCAAGUUUGUGGAUUUGAAGUAAUAACUCAGUGCGUCAUAAAAAUUUUAAUUGCUUUGGGUUUUCCUCA---GUU --------------((((..(((..(((.((((((((((((....)))))).)))))).)))(((.(((................))).))).)))..)))).---... ( -24.89) >consensus ______________G_GGGGGGCGUGGCCAUUACUCAAGUUUGUGGAUUUGAAGUAAUAACUCAGUGCGUCAUAAAAAUUUUAAUUGCUUUGGGUU_UC_UCA___G__ .................((((........((((((((((((....)))))).))))))(((((((.(((................))).)))))))..))))....... (-15.50 = -16.06 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:38 2006