| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,203,792 – 11,203,886 |
| Length | 94 |
| Max. P | 0.849896 |
| Location | 11,203,792 – 11,203,886 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 70.72 |
| Mean single sequence MFE | -25.02 |
| Consensus MFE | -14.52 |
| Energy contribution | -14.90 |
| Covariance contribution | 0.38 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.849896 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11203792 94 - 22407834 GCGACCUCUCUGAGCAGCACCCUGCACUCAGAGAAAUAAAGUUCUAAAACU-------A---U---------------UGAGCAGCUGAUAGAAGUUCACCCUCCUUUUGGCAAUGGAA- ....((((((((((..((.....)).))))))))......((((.......-------.---.---------------.)))).((..(.((.((......)).)).)..))...))..- ( -23.50) >DroSec_CAF1 39807 94 - 1 GCGACCUCUCUGAGCAGCACAAUGCACUUAGAGAAAUAAAGUUCUUAAACU-------A---U---------------UGAGCAAGUGGCACAAGUUCACCCACCCUU-CGUUGUGGAAA ((.((.((((((((..((.....)).))))))))......((((.......-------.---.---------------.))))..)).))..........((((....-....))))... ( -23.10) >DroSim_CAF1 41603 94 - 1 GCGACCUCUCUGAGCAGCACAAUGCACUCAGAGAAAUAAGGUUCUCAAACU-------A---U---------------UGAGCACCUGACACAAGUUCACCAUCCCUU-GGUUUUGGAAA ......((((((((..((.....)).))))))))....((((.(((((...-------.---)---------------)))).))))....((((...((((.....)-))))))).... ( -27.00) >DroEre_CAF1 40130 119 - 1 GCGACCUCUCUGAGCAGCGCCCUGCACUCGGAGAAAUAAAGUUCUCAGUUCUCAAGCUACUAUUUUCUUUCAUUGCACUAACAAGGUGGGACAAGUUCACCUAUACUU-CCACUUGGAAA ((((..(((((((((((....))))..)))))))............(((......)))..............)))).......(((((((.....)))))))....((-((....)))). ( -26.50) >consensus GCGACCUCUCUGAGCAGCACAAUGCACUCAGAGAAAUAAAGUUCUCAAACU_______A___U_______________UGAGCAGCUGACACAAGUUCACCCACCCUU_CGUUUUGGAAA ....((((((((((..((.....)).))))))))..................................................(((((.......)))))..............))... (-14.52 = -14.90 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:34 2006