Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,201,458 – 11,201,550 |
Length | 92 |
Max. P | 0.664733 |
Location | 11,201,458 – 11,201,550 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 83.81 |
Mean single sequence MFE | -34.32 |
Consensus MFE | -18.77 |
Energy contribution | -19.05 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.04 |
Mean z-score | -3.35 |
Structure conservation index | 0.55 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.664733 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11201458 92 - 22407834 -AAUCCCAUGCCAAAUGGGUCAAGUUUCUGGC--AUCCAGC----UAGCCUUGACUCCACGACU---GCUAACGCAGCUUGAG-UGCCAAAUAAU-------GGCAGGAC -....((.(((((..(((((((((...(((((--.....))----))).)))))).)))(((((---((....)))).)))..-..........)-------)))))).. ( -34.70) >DroPse_CAF1 49213 102 - 1 UCGUCCCGUGCCAAAUGGGUCAAGUUUCUGGCGCUUCCAGC----UAGCCUUGACUCUGC-CCC---GCUUACGCAGCAUCCGCUGCCAAAUAGUCGAUGGUGCCACAAC .......(..(((...((((((((...(((((.......))----))).))))))))...-..(---(((...(((((....))))).....)).)).)))..)...... ( -33.20) >DroSec_CAF1 37403 92 - 1 -AGUUCCCUGGCAAAUGGGUCAAGUUUCUGGC--AUCCAGC----UAGCCUUGACUCCACGACU---GCUUACGCAGCUUGAG-UGCCAAAUAAU-------GGCAGAAC -.(((((((((((..(((((((((...(((((--.....))----))).)))))).)))(((((---((....)))).)))..-)))))......-------))..)))) ( -30.90) >DroSim_CAF1 39160 95 - 1 -AAUUCCCUGCCAAAUGGGUCAAGUUUCUGGC--AUCCAGC----UAGCCUUGACUCCACGACUGCUGCUUACGCAGCUUGAG-UGCCAAAUAAU-------GGCAGGAC -.....(((((((...((((((((...(((((--.....))----))).))))))))(((....(((((....)))))....)-))........)-------)))))).. ( -40.90) >DroEre_CAF1 37666 90 - 1 -AAU-CCCUGCCAAAUGGGUCAAGUUUCUGGC--AUCCAGC----UAGCCUUGACUC-CCGACU---GCCUACGCAGCUUCAG-UGCCAAAUAAA-------GGCAGGUC -...-.((((((....((((((((...(((((--.....))----))).))))))))-..(.((---((....))))).....-...........-------)))))).. ( -32.30) >DroYak_CAF1 39167 96 - 1 -AAUUCCCUGCCAAAUGGGUCAAGUUGCUGGC--AUCCAGCUAGCUAGCCUUGACUCCCCGACU---GCUUACGCAGCUUCAG-UGCCAAAUAAU-------GGCAGCAC -......((((((...((((((((..((((((--.....))))))....))))))))...(.((---((....))))).....-..........)-------)))))... ( -33.90) >consensus _AAUUCCCUGCCAAAUGGGUCAAGUUUCUGGC__AUCCAGC____UAGCCUUGACUCCACGACU___GCUUACGCAGCUUCAG_UGCCAAAUAAU_______GGCAGGAC .......(((((....((((((((((.((((.....))))......)).))))))))................(((.(....).)))...............)))))... (-18.77 = -19.05 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:33 2006