Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,191,453 – 11,191,556 |
Length | 103 |
Max. P | 0.715086 |
Location | 11,191,453 – 11,191,556 |
---|---|
Length | 103 |
Sequences | 3 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 83.12 |
Mean single sequence MFE | -9.10 |
Consensus MFE | -8.88 |
Energy contribution | -8.00 |
Covariance contribution | -0.88 |
Combinations/Pair | 1.19 |
Mean z-score | 0.13 |
Structure conservation index | 0.98 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.715086 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11191453 103 + 22407834 UUGUUAGGUAAAAAAAAAAAAAUGGAAAACA-AUGUAAUUUAA-AACGAUAAGACUAAAUGAUACCCAUGCUUGUAGUAAAGCUUAAUAGGAGAAAGAAAACAAA (((((((((.............((.....))-...........-.((.(((((.....(((.....))).))))).))...)))))))))............... ( -9.70) >DroSec_CAF1 27969 99 + 1 UUGUUAGGUCAAA------AAAUGAAAAACAAAAGAAAUUUAAAAACGAUGAGACUAAAUGAUACCCAUGUUUAUAGUAAUGCUUAAUAGGAGGAAGAAACCAAA (((((((((....------............(((....)))....((.(((((.....(((.....))).))))).))...)))))))))..((......))... ( -8.10) >DroSim_CAF1 27753 92 + 1 UUGUUAGGUCAAA------AAAUGGAAAACAAAUGGAAUUUAA-AACGAUGAGACUAAGUGAUACCCAUGCUUAUAGUACAGCUUAAUAGGAGAAAGAA------ (((((((((....------...((.....))............-.((.(((((.....(((.....))).))))).))...))))))))).........------ ( -9.50) >consensus UUGUUAGGUCAAA______AAAUGGAAAACAAAUGAAAUUUAA_AACGAUGAGACUAAAUGAUACCCAUGCUUAUAGUAAAGCUUAAUAGGAGAAAGAAA_CAAA (((((((((.............((.....))..............((.(((((.....(((.....))).))))).))...)))))))))............... ( -8.88 = -8.00 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:32 2006