Locus 3832

Sequence ID 2L_DroMel_CAF1
Location 11,186,812 – 11,186,909
Length 97
Max. P 0.515342
window6039

overview

Window 9

Location 11,186,812 – 11,186,909
Length 97
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 75.68
Mean single sequence MFE -22.64
Consensus MFE -4.89
Energy contribution -7.05
Covariance contribution 2.16
Combinations/Pair 1.06
Mean z-score -1.58
Structure conservation index 0.22
SVM decision value -0.04
SVM RNA-class probability 0.515342
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11186812 97 - 22407834
GGGUUGCGUAA-------ACCAAUUUUAGUUUUAGCCAGUCUAACAAUUUGUACUCCACUCCAUAAGAAGGAUUUCCUUCAAA---------CAAAGAAGUUGAACCGAGCAA
.((((.....)-------))).............(((.((.((((..(((((..............(((((....)))))..)---------))))...)))).)).).)).. ( -15.59)
>DroSec_CAF1 23327 96 - 1
GGGUUGGGUCA-------AGCAAUUUAAGAUUUAGUCAGGCUAAUAAUUAGUACUUCAUUCCAUAAGUA-GAUUUCCUUCAAA---------CAAAGAAGCUGACCCGAGCAA
.(.((((((((-------.((...((((...((((.....))))...))))(((((........)))))-.............---------.......)))))))))).).. ( -21.50)
>DroSim_CAF1 23111 96 - 1
GGGUUGGGUCA-------ACCAAUUUAAGUUUUAGCCAGGCUAACAAUUUGUACUGCACGCCAUAAGUA-GAUUUCCUGCAAA---------CAAAGAAGUUGACCCGAGCAA
.(.((((((((-------((.....(((((((((((...))))).))))))...............(((-(.....))))...---------.......)))))))))).).. ( -25.80)
>DroEre_CAF1 23902 105 - 1
GGGUCGGGUGA-------AUCAAUUUAAGUUUAGGUCAGGCAAACAGUUUGUACUCCAAUGCAUAAGUC-GAUUCCUUUCCAACAAGUCUAACAAAGAAAUGGACCCAAGCAA
((((((((.((-------(((.(((((.((...((.(((((.....)))))....))...)).))))).-)))))...)))..((..(((.....)))..)))))))...... ( -28.20)
>DroYak_CAF1 24765 96 - 1
GGUUUGGGUCAACCGUCAACCGACUUAAGUUUUAGUCAGGCAAACAA-------UCCAAUCCAUAAGUU-GAUUUCCUUCCAA---------CAAAGAAAUUGACCCCAGCAA
.(((.(((((((..((((((.((((........)))).((.......-------.)).........)))-)))...(((....---------..)))...))))))).))).. ( -22.10)
>consensus
GGGUUGGGUCA_______ACCAAUUUAAGUUUUAGUCAGGCUAACAAUUUGUACUCCAAUCCAUAAGUA_GAUUUCCUUCAAA_________CAAAGAAGUUGACCCGAGCAA
.(.(((((((.....................((((.....))))..........................((((((....................))))))))))))).).. ( -4.89 =  -7.05 +   2.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:31 2006