Locus 3830

Sequence ID 2L_DroMel_CAF1
Location 11,181,986 – 11,182,080
Length 94
Max. P 0.686506
window6036

overview

Window 6

Location 11,181,986 – 11,182,080
Length 94
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 81.92
Mean single sequence MFE -23.42
Consensus MFE -15.94
Energy contribution -16.13
Covariance contribution 0.19
Combinations/Pair 1.04
Mean z-score -1.80
Structure conservation index 0.68
SVM decision value 0.32
SVM RNA-class probability 0.686506
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11181986 94 - 22407834
AGGCAGCUCAAAAGUGAGUAUUUCCAAGAAAUUGCAAAUUAUUUUUGAGCCGAGCGCCUGCGCCUGCUCCUCACCCUGCCAGUUCCC-CCCGGUC
.((((((((((((((((...(((.(((....))).))))))))))))))).(((((........))))).......)))).......-....... ( -26.50)
>DroPse_CAF1 23452 80 - 1
AGGCAGCACAAAAGUGAGUAUUUCCAAGAAAUUGCAAAUUAUUUUUGAGCCGAGCGCCUGCGCCUGCUUCUCAGCA-GCCA--------------
.(((.((.(((((((((...(((.(((....))).))))))))))))(((.(.(((....)))).))).....)).-))).-------------- ( -23.10)
>DroEre_CAF1 19165 73 - 1
AGGCAGCUCAAAAGUGAGUAUUUCCAAGAAAUUGCAAAUUAUUUUUGAGCCGAGCGCCUGCGCCUGCUC-----------------CCCC-----
((((.((((((((((((...(((.(((....))).)))))))))))))))...((....))))))....-----------------....----- ( -22.20)
>DroYak_CAF1 19977 90 - 1
AGGCAGCUCAAAAGUGAGUAUUUCCAAGAAAUUGCAAAUUAUUUUUGAGCCGAGCGCCUGCGCCUGCUCCUCGCCCUGCCAGUUCCCCCC-----
.((((((((((((((((...(((.(((....))).))))))))))))))).(((((........))))).......))))..........----- ( -26.50)
>DroAna_CAF1 16764 78 - 1
AGGCACCGCCGAAGUGAGUUUUUCCAAGAAAUUGCAAAUUAUUUUUGAGCCGAGCGCCUGCGCCUGCUCCUCCGCUU------------C-----
.(((...)))((((((((..(((.(((....))).)))........((((.(.(((....)))).)))))).)))))------------)----- ( -21.40)
>DroPer_CAF1 23216 77 - 1
AGGCAGCACAAAAGUGAGUAUUUCCAAGAAAUUGCAAAUUAUUUUUGAGCCGAGCGCCUGCGCCUGCUUCUCA----GCCA--------------
.(((....(((((((((...(((.(((....))).))))))))))))(((.(.(((....)))).))).....----))).-------------- ( -20.80)
>consensus
AGGCAGCUCAAAAGUGAGUAUUUCCAAGAAAUUGCAAAUUAUUUUUGAGCCGAGCGCCUGCGCCUGCUCCUCA_C__GCCA________C_____
((((.((.(((((((((...(((.(((....))).)))))))))))).))...((....)))))).............................. (-15.94 = -16.13 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:29 2006