Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,200,069 – 1,200,203 |
Length | 134 |
Max. P | 0.832038 |
Location | 1,200,069 – 1,200,163 |
---|---|
Length | 94 |
Sequences | 3 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 82.86 |
Mean single sequence MFE | -23.90 |
Consensus MFE | -16.66 |
Energy contribution | -16.00 |
Covariance contribution | -0.66 |
Combinations/Pair | 1.25 |
Mean z-score | -1.81 |
Structure conservation index | 0.70 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.614630 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1200069 94 + 22407834 UAUUGAGCGAAGUGUUGUUGUGGGAAAACCCGAAACUUACUUAUCAACCGAACUGGGCUCGUCUUAUCUGAAAUUUAGAUAAGAUUACAACGUA ....((((.(((((..(((.((((....)))).))).))))).....((.....))))))(((((((((((...)))))))))))......... ( -26.70) >DroSim_CAF1 17134 92 + 1 UAUUGAGCGAAGUGUUGUUGUGGGAAAACCUGAAA--UACUUAUCAGGCGAACUGGGCUCGUCUUAUCUGGAAUUUAGAUAAGAUUUCAACGUA ....((((.(((((((....((((....)))).))--))))).((((.....))))))))((((((((((.....))))))))))......... ( -26.00) >DroEre_CAF1 16970 86 + 1 UACUGGGCGUAGUGUUGUUGUGGGAAAGUCUGAGG--AACUUAUCAGCUGAACU------GUCUUAUCUGGCAUUUAGAUAAGAUUUCAACGUU .....((((((((...((((((((....((....)--).)))).))))...)))------((((((((((.....))))))))))....))))) ( -19.00) >consensus UAUUGAGCGAAGUGUUGUUGUGGGAAAACCUGAAA__UACUUAUCAGCCGAACUGGGCUCGUCUUAUCUGGAAUUUAGAUAAGAUUUCAACGUA ..((((...(((((......((((....)))).....))))).)))).............(((((((((((...)))))))))))......... (-16.66 = -16.00 + -0.66)
Location | 1,200,069 – 1,200,163 |
---|---|
Length | 94 |
Sequences | 3 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 82.86 |
Mean single sequence MFE | -19.03 |
Consensus MFE | -12.77 |
Energy contribution | -12.33 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.12 |
Mean z-score | -2.30 |
Structure conservation index | 0.67 |
SVM decision value | 0.72 |
SVM RNA-class probability | 0.832038 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1200069 94 - 22407834 UACGUUGUAAUCUUAUCUAAAUUUCAGAUAAGACGAGCCCAGUUCGGUUGAUAAGUAAGUUUCGGGUUUUCCCACAACAACACUUCGCUCAAUA ..........((((((((.......)))))))).((((..(((...((((....(.......)(((....))).))))...)))..)))).... ( -21.60) >DroSim_CAF1 17134 92 - 1 UACGUUGAAAUCUUAUCUAAAUUCCAGAUAAGACGAGCCCAGUUCGCCUGAUAAGUA--UUUCAGGUUUUCCCACAACAACACUUCGCUCAAUA ...((((...((((((((.......)))))))).((((...))))((((((......--..)))))).......))))................ ( -20.40) >DroEre_CAF1 16970 86 - 1 AACGUUGAAAUCUUAUCUAAAUGCCAGAUAAGAC------AGUUCAGCUGAUAAGUU--CCUCAGACUUUCCCACAACAACACUACGCCCAGUA ...((((((.((((((((.......)))))))).------..)))))).((.(((((--.....)))))))....................... ( -15.10) >consensus UACGUUGAAAUCUUAUCUAAAUUCCAGAUAAGACGAGCCCAGUUCGGCUGAUAAGUA__UUUCAGGUUUUCCCACAACAACACUUCGCUCAAUA ...((((...((((((((.......))))))))..............((((..........)))).........))))................ (-12.77 = -12.33 + -0.44)
Location | 1,200,083 – 1,200,203 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 83.89 |
Mean single sequence MFE | -31.25 |
Consensus MFE | -19.31 |
Energy contribution | -19.87 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.10 |
Mean z-score | -2.24 |
Structure conservation index | 0.62 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.785922 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1200083 120 + 22407834 UUGUUGUGGGAAAACCCGAAACUUACUUAUCAACCGAACUGGGCUCGUCUUAUCUGAAAUUUAGAUAAGAUUACAACGUAUUCGAAUCAUUUUCCUAUAAAUGGUUUGACAGGAUAGGCU ..(((.((((....)))).)))...((((((..((.....))....(((((((((((...)))))))))))..........(((((((((((......)))))))))))...)))))).. ( -31.00) >DroSim_CAF1 17148 118 + 1 UUGUUGUGGGAAAACCUGAAA--UACUUAUCAGGCGAACUGGGCUCGUCUUAUCUGGAAUUUAGAUAAGAUUUCAACGUAUUCGAGCCAUUUUCCUAUAAAUGCUAUGAGAGGAUAGGCU ...((((((((((((((((..--......))))).......(((((((((((((((.....)))))))))............)))))).)))))))))))...((((......))))... ( -35.20) >DroEre_CAF1 16984 112 + 1 UUGUUGUGGGAAAGUCUGAGG--AACUUAUCAGCUGAACU------GUCUUAUCUGGCAUUUAGAUAAGAUUUCAACGUUUUCGAAUCUUUUUCCUAUAAAUGGAAUGACAGAAUAGGGU ...(((((((((((.((((..--......)))))((((..------((((((((((.....))))))))))))))...............)))))))))).................... ( -24.50) >DroYak_CAF1 16981 118 + 1 UUGUUGUGGGAAAUUCUGAAA--UACUUAUAAGCCCAACUGGGCUCGUCUUAUCUGGAAUUUAGAUAAGAUUUCAGCGUAUUCCAAUCAUUUUCCUAUAAAUGCUAUGACAGCAGAAGGU (((((((((((.((.(((((.--........(((((....))))).((((((((((.....))))))))))))))).)).))))...(((((......))))).....)))))))..... ( -34.30) >consensus UUGUUGUGGGAAAACCUGAAA__UACUUAUCAGCCGAACUGGGCUCGUCUUAUCUGGAAUUUAGAUAAGAUUUCAACGUAUUCGAAUCAUUUUCCUAUAAAUGCUAUGACAGGAUAGGCU ...(((((((((((.........(((...((((.....))))....(((((((((((...)))))))))))......))).........))))))))))).................... (-19.31 = -19.87 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:33 2006