Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,170,111 – 11,170,207 |
Length | 96 |
Max. P | 0.824606 |
Location | 11,170,111 – 11,170,207 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 88.19 |
Mean single sequence MFE | -31.42 |
Consensus MFE | -23.81 |
Energy contribution | -24.75 |
Covariance contribution | 0.94 |
Combinations/Pair | 1.10 |
Mean z-score | -1.98 |
Structure conservation index | 0.76 |
SVM decision value | 0.69 |
SVM RNA-class probability | 0.824606 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11170111 96 - 22407834 CACGAAGUGAAUACAGUGCGUACCAGAAUGUAGUGCCAACGCGGCGGAUGAGUGAUUUUCCCAAGCGAAAGGGAUGCGAGAUUACUCAUACGCCUA ......(((....((.(((((......))))).))....)))((((.(((((((((((((((........))))....))))))))))).)))).. ( -32.40) >DroSec_CAF1 6806 95 - 1 CGCGGAGUGAAUACAGUGCGUAUCAGAAUGUAGUGCCAACGCGGCGGAUGAGUGAUUUCCUCAAGC-AAAGGGAUGCGAGAUUACUCAUACGCCUA .(((...((....((.(((((......))))).)).)).)))((((.((((((((((((.....((-(......))))))))))))))).)))).. ( -32.80) >DroEre_CAF1 7206 95 - 1 CACGGAGUGAAUACAGUGCGUAUCAGAAUGUAGUGGCAACGGGGCGGAUGAGUGAUUGCCCCAAGACAAUGGU-UGCGAGAUUAGUCAUACGCCUA ..((...((....((.(((((......))))).)).)).))(((((.((((.(((((((.(((......))).-.))..))))).)))).))))). ( -27.50) >DroYak_CAF1 7143 96 - 1 CACGUAGUGAAUACAGUGGGUAUUAGCAUGUGGUGGCAACGGGGCGGAUGAGUGAUUGCCCCAAGACAGUGGCAUGCGAGAUUACUCAUACGCCUA (((((.((.(((((.....))))).))))))).((....))(((((.((((((((((((.(((......)))...))..)))))))))).))))). ( -33.00) >consensus CACGGAGUGAAUACAGUGCGUAUCAGAAUGUAGUGCCAACGCGGCGGAUGAGUGAUUGCCCCAAGACAAAGGGAUGCGAGAUUACUCAUACGCCUA ..((...((....((.(((((......))))).)).)).)).((((.(((((((((((((((........)))....)))))))))))).)))).. (-23.81 = -24.75 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:27 2006