Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,162,278 – 11,162,398 |
Length | 120 |
Max. P | 0.717003 |
Location | 11,162,278 – 11,162,398 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 99.44 |
Mean single sequence MFE | -36.70 |
Consensus MFE | -36.70 |
Energy contribution | -36.70 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.58 |
Structure conservation index | 1.00 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.717003 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11162278 120 - 22407834 UUACUGGGAUCGGGAAUUCAACAGAGAUCGCAGCUCCAAGGAUCGCGAAAGGGAUCUCGAGUGGGAGCGGGAACGGGCUCGCGAGUGGGAGAGAGAGCGGGAACGAGAUUGGGAUAGGGA ...(((.((((.(........)...)))).)))((((..(((((.(....).)))))...(((((..((....))..))))).....))))......((....))............... ( -36.70) >DroSec_CAF1 25 120 - 1 UUACUGGGAUCGGGAGUUCAACAGAGAUCGCAGCUCCAAGGAUCGCGAAAGGGAUCUCGAGUGGGAGCGGGAACGGGCUCGCGAGUGGGAGAGAGAGCGGGAACGAGAUUGGGAUAGGGA ...(((.((((.(........)...)))).)))((((..(((((.(....).)))))...(((((..((....))..))))).....))))......((....))............... ( -36.70) >DroSim_CAF1 25 120 - 1 UUACUGGGAUCGGGAGUUCAACAGAGAUCGCAGCUCCAAGGAUCGCGAAAGGGAUCUCGAGUGGGAGCGGGAACGGGCUCGCGAGUGGGAGAGAGAGCGGGAACGAGAUUGGGAUAGGGA ...(((.((((.(........)...)))).)))((((..(((((.(....).)))))...(((((..((....))..))))).....))))......((....))............... ( -36.70) >consensus UUACUGGGAUCGGGAGUUCAACAGAGAUCGCAGCUCCAAGGAUCGCGAAAGGGAUCUCGAGUGGGAGCGGGAACGGGCUCGCGAGUGGGAGAGAGAGCGGGAACGAGAUUGGGAUAGGGA ...(((.((((.(........)...)))).)))((((..(((((.(....).)))))...(((((..((....))..))))).....))))......((....))............... (-36.70 = -36.70 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:20 2006