Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,156,956 – 11,157,069 |
Length | 113 |
Max. P | 0.706726 |
Location | 11,156,956 – 11,157,069 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 98.58 |
Mean single sequence MFE | -23.94 |
Consensus MFE | -22.76 |
Energy contribution | -23.16 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.30 |
Structure conservation index | 0.95 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.706726 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11156956 113 - 22407834 AUACUUUCUGGUAACGGAAAGGUGAACUUUGCCAUGAAAAUUUCAUCAGAUCUGAUAGGAAUAUGUUGAAGAUAUUUUGUAAGAUGCCUUAAAUUUCUCAACUCAAGUUCUUU ...(((((((....)))))))..((((((..........(((((((((....)))).)))))..(((((.((.(((...((((....))))))).)))))))..))))))... ( -24.20) >DroSec_CAF1 5288 113 - 1 AUACUUUCUGGUAACGGAAAAGUGAACUUUGCCAUGAAAAUUUCAUCAGAUCUGAUAGGAAUAUGUUGAAGAUAUUUUGUAAGAUGCCUUAAAUUUCUCAACUCAAGUUCUUU ..((((((((....))).)))))((((((..........(((((((((....)))).)))))..(((((.((.(((...((((....))))))).)))))))..))))))... ( -21.20) >DroSim_CAF1 5321 113 - 1 AUACUUUCUGGUAACGGAAAGGUGAACUUUGCCAUGAAAAUUUCAUCAGAUCUGAUAGGAAUAUGUUGAAGAUAUUUUGUAAGAUGCCUUAAAUUUCUCAACUCAAGUUCUUU ...(((((((....)))))))..((((((..........(((((((((....)))).)))))..(((((.((.(((...((((....))))))).)))))))..))))))... ( -24.20) >DroEre_CAF1 5251 113 - 1 AUACUUUCUGGCAACGGAAAGGUGAACUUUGCCAUGAAAAUUUCAUCAGAUCUGAUAGGAAUAUGUUGAAGAUAUUUUGUAAGAUGCCUUAAAUUUCUCAACUCAAGUUCUUU ...(((((((....)))))))..((((((..........(((((((((....)))).)))))..(((((.((.(((...((((....))))))).)))))))..))))))... ( -26.70) >DroYak_CAF1 5279 113 - 1 AUACUUUCUGGUAACGGAAAGGUGAACUUUGCCAUGAAAAUUUCAUCUGAUCUGAUAGGAAUAUGUUGAAGAUAUUUUGUAAGAUGCCUUAAAUUUCUCAACUCAAGUUCUCU ...(((((((....)))))))(.((((((..........((((((((......))).)))))..(((((.((.(((...((((....))))))).)))))))..)))))).). ( -23.40) >consensus AUACUUUCUGGUAACGGAAAGGUGAACUUUGCCAUGAAAAUUUCAUCAGAUCUGAUAGGAAUAUGUUGAAGAUAUUUUGUAAGAUGCCUUAAAUUUCUCAACUCAAGUUCUUU ...(((((((....)))))))..((((((..........(((((((((....)))).)))))..(((((.((.(((...((((....))))))).)))))))..))))))... (-22.76 = -23.16 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:17 2006