Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,143,840 – 11,143,948 |
Length | 108 |
Max. P | 0.515874 |
Location | 11,143,840 – 11,143,948 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.61 |
Mean single sequence MFE | -26.61 |
Consensus MFE | -15.66 |
Energy contribution | -16.25 |
Covariance contribution | 0.59 |
Combinations/Pair | 1.09 |
Mean z-score | -1.84 |
Structure conservation index | 0.59 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.515874 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11143840 108 - 22407834 CUGGCCUCCGCAUGGAACACACCAAUGCUAUCCUUCGUUAGUA-----------GACCCAUUACUUAAAUCUGGGUCACCGGUGUUCAAUUCAAG-AGUUACACCCUUUGCCCUUUACUU ..(((.(((....)))..(((((..(((((........)))))-----------((((((...........))))))...)))))..........-.............)))........ ( -24.30) >DroSec_CAF1 12960 108 - 1 CUGGCCUCCGCCUGGAACACACCAAUGCUAUCCUUCGUUAGUA-----------GACCCAUUACUCAAAUCUGGGUCACCGGUGUUCAAUGCAAG-AGUUGCACCCUUUGCCCUUUACUU ..(((.........((((((.....(((((........)))))-----------((((((...........))))))....))))))..((((..-...))))......)))........ ( -26.80) >DroSim_CAF1 12981 108 - 1 CUGGCCUCCGCCUGGAACACACCAAUGCUAUCAUUCGUUAGUA-----------GACCCAUUACUCAAAUCUGGGUCACCGGUGUUCAAUUCAAG-AGUUGCACCCUUUGCCCUUUACUU ..(((....)))..((((((.....(((((........)))))-----------((((((...........))))))....))))))......((-((..(((.....))).)))).... ( -26.10) >DroEre_CAF1 13074 108 - 1 CUGGCCUCCGCCUGGAACACACCAAUGCUUUCCUUCGUUAGUA-----------GACCCAUUACUCGAAUCUGGGUCACAGGUGUUCAAUUCGAG-AGCAGAGCGCCUUGCCCUUUACUU ..((((((.((((.(((.(((((..((((..(....)..))))-----------((((((...........))))))...)))))....))).))-.)).))).)))............. ( -33.30) >DroYak_CAF1 13105 108 - 1 CUGGCCUCCGCCUGGAACACACCAAUGCUUUCCUUCGUUAGUA-----------GACCCAUUACUCAAAUCUAGGUCACCGGUGUUCAAUUUAAG-AACUCAACCCUUUGGCCUUUACUU ..(((((((....)))..(((((..((((..(....)..))))-----------((((...............))))...)))))..........-.............))))....... ( -21.56) >DroAna_CAF1 12789 110 - 1 CUGGCUUCCGCAUGGAACACACCCAUGCUAUCAUUUGUGAGUACUAUGACAGGUGAACCAU------AAACUGGGUCACAUAGGUUCAAUUCAAAGUGCUUCUCAUCUUGACAUUU---- .........((((((.......))))))..(((..((.(((((((.(((....((((((..------...............))))))..))).)))))))..))...))).....---- ( -27.63) >consensus CUGGCCUCCGCCUGGAACACACCAAUGCUAUCCUUCGUUAGUA___________GACCCAUUACUCAAAUCUGGGUCACCGGUGUUCAAUUCAAG_AGCUGCACCCUUUGCCCUUUACUU (.(((....))).)((((((((.((((........)))).))............((((((...........))))))....))))))................................. (-15.66 = -16.25 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:12 2006