Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,199,493 – 1,199,601 |
Length | 108 |
Max. P | 0.587840 |
Location | 1,199,493 – 1,199,601 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 89.63 |
Mean single sequence MFE | -34.06 |
Consensus MFE | -25.40 |
Energy contribution | -25.84 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.12 |
Mean z-score | -1.64 |
Structure conservation index | 0.75 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.587840 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1199493 108 + 22407834 GGGUCCUGCGCAUCCUGGGGAUCACCAACCAGGACCGCAUCCCCCUCACCACGGAGAUCCGAAGCCCCAUCACGGACAUCACUAGGCCCAUGGACAAGGACUAUAAAU .(((((((((..((((((((....))..)))))).)))..........((((((....)))..(((((.....)).........)))...)))...))))))...... ( -30.90) >DroSec_CAF1 15183 107 + 1 GGGUCCUGCUCAUCCUGGGGAUCACCAUCCUGGAGCACAUCC-CCGCACCACGGAGAUCCGAAGCCCCACCAUGGUCAUCACUAGGCCCAUGGACAAGGACUAUAAAU .(((((((..((((((((.(((.(((((..(((.((..(((.-(((.....))).))).....)).)))..))))).))).)))))...)))..).))))))...... ( -36.60) >DroSim_CAF1 16493 108 + 1 GGGUCCUGCUCAUCCUGGGGAUCACCAUCCUGGACCACAUCCCCCGCACCACGGAGAUCCGAAGCCCCAUCAUGGACAUCACUAGGCCCAUGGACAAGGACUAUAAAU .(((((((..(((((((((((((.((.....))..........(((.....))).)))))((.(.((......)).).)).)))))...)))..).))))))...... ( -31.20) >DroEre_CAF1 16322 108 + 1 GGGUCCUGCGCAUCCUGGCGACCACCAUCCAGGACCGCAUCCUCCGCACCACGGAGAUCCGAAGCACCACCACGGACACCACUAGGCCUGUGGACAAGGACUAUGAGU .((((((((((.((((((..........))))))..))...(((((.....))))).......))....((((((...((....)).))))))...))))))...... ( -37.40) >DroYak_CAF1 15960 108 + 1 GGGUCCUGGGCAUCCUGGGGACCACCAUCCAGGACCGCAUCCUCCUCACCACGGAGAUCCGAAGCCCCACCACGGACACCACUAGGCCUAUAAACAAGGACUAUGAAA ((((((.((((.(((((((........))))))).((.(((.(((.......)))))).))..))))......)))).))..(((.(((.......))).)))..... ( -34.20) >consensus GGGUCCUGCGCAUCCUGGGGAUCACCAUCCAGGACCGCAUCCCCCGCACCACGGAGAUCCGAAGCCCCACCACGGACAUCACUAGGCCCAUGGACAAGGACUAUAAAU .((((((........(((((...........(((.....))).........(((....)))...)))))((((((.(........).))))))...))))))...... (-25.40 = -25.84 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:30 2006