Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,143,495 – 11,143,597 |
Length | 102 |
Max. P | 0.876619 |
Location | 11,143,495 – 11,143,597 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 75.14 |
Mean single sequence MFE | -27.38 |
Consensus MFE | -19.19 |
Energy contribution | -19.22 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.26 |
Mean z-score | -1.34 |
Structure conservation index | 0.70 |
SVM decision value | 0.90 |
SVM RNA-class probability | 0.876619 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11143495 102 + 22407834 AUCAGAGAGUUACCUUGGAAGCCGGCGCUAAAGUUCGAGCAAAGGUGUGAAAUGUACUUUUGUUUGAGACAAUUGGAUCGGAGCAUUUCUAG--------GGAAUAUAAA- ............(((((((((((((..((((..((((((((((((((.......))))))))))))))....)))).))))....)))))))--------))........- ( -29.10) >DroPse_CAF1 13660 104 + 1 UGAGAGGCAUUACCUUCGAGGCUGGGGCCAGAGUUCGUGCAAAGGUGGGAAAUGUGCUUUUGUUGGAGACAAUUGAGUCAGAGCAUUUCUACAU------AGGAUAGAAG- ..........((((((((((.(((....)))..))))....))))))((((((((((((..((((....)))).))))....))))))))....------..........- ( -26.60) >DroEre_CAF1 12708 102 + 1 AUCAAGAACUCACCUUGGAAGCUGGAGCCAAAGUUCGUGCAAAGGUGUGAAAUGUACUCUUGUUGGAGACAAUUGGAUCGGAGCAUUUCUGU--------GGGAUUGAAA- .((((...(((((...(((((((.((.((((..((((..(....)..)))).(((.((((....))))))).)))).)).).)).)))).))--------))).))))..- ( -27.70) >DroWil_CAF1 16984 109 + 1 AUUAAGA-AUUACCUUCGAGGCAGGUGCAAGUGUUCUUGCAUAGGUAUGAAACGUGCUCUUGUUGGAGACAAUUGAGUCUGAGCAUUUCUAAAUCGAAAGAGAAUGAAAA- .......-..(((((.....(((((.((....)).)))))..))))).....((.((((..((((....)))).)))).))....((((....((....))....)))).- ( -28.50) >DroAna_CAF1 12476 101 + 1 AUUAAUACUCUACCUUUGAGGCGGGGGCCAGAGUUCGAGCAAAGGUAUGAAAUGUACUCUUAUUGGAGACUAUGGAGUCGGCGCAUUUCUAA----------AAUAAACAU ..........((((((((.(((....))).(....)...)))))))).((((((((((((....(....)...)))))....)))))))...----------......... ( -25.80) >DroPer_CAF1 13798 104 + 1 UGAGAGGCAUUACCUUCGAGGCUGGGGCCAGAGUUCGUGCAAAGGUGGGAAAUGUGCUUUUGUUGGAGACAAUUGAGUCAGAGCAUUUCUACAU------AGGAUAGAAG- ..........((((((((((.(((....)))..))))....))))))((((((((((((..((((....)))).))))....))))))))....------..........- ( -26.60) >consensus AUAAAGACAUUACCUUCGAGGCUGGGGCCAGAGUUCGUGCAAAGGUGUGAAAUGUACUCUUGUUGGAGACAAUUGAGUCGGAGCAUUUCUAA________AGAAUAGAAA_ ..........((((((....((..((((....))))..)).)))))).(((((((((((..((((....)))).))))....)))))))...................... (-19.19 = -19.22 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:10 2006