| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,141,152 – 11,141,260 |
| Length | 108 |
| Max. P | 0.870585 |
| Location | 11,141,152 – 11,141,260 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 75.98 |
| Mean single sequence MFE | -25.20 |
| Consensus MFE | -14.25 |
| Energy contribution | -14.25 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.87 |
| SVM RNA-class probability | 0.870585 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11141152 108 - 22407834 AUUUCGUGGCAAUAUUGUGGCCAUGAAAAAGAUUCACAAGAAGAGCGUAGACAUUACCCGUUCAAUUCGCAAGGAACUAAAAUUGAUGCGAGAGGUAGA----ACGC---CUAGG--- .(((((((((.........))))))))).............((.((((.....(((((((((((((((....))).......)))).)))...))))).----))))---))...--- ( -24.21) >DroVir_CAF1 12018 110 - 1 UUUUCGUGGUAACAUUGUUGCCAUGAAAAAAAUUCAUAAAAAGAAUGUGGACAUAACGCGUUCUAUUCGCAAGGAAUUAAAAUUGAUGCGAGAGGUGAG----CAUUUAUAUAG---- (((((((((((((...)))))))))))))...(((((....((((((((.......)))))))).((((((..((.......))..))))))..)))))----...........---- ( -31.50) >DroGri_CAF1 11085 114 - 1 UUUUCGUGGUAAUAUCGUAGCCAUGAAAAAGAUUCAUAAAAAGAAUGUGGACAUAACUCGUUCAAUCCGUAAAGAACUCAAAUUGAUGCGGGAGGUGAG----CCAUAUAUGAAAUAU ((((((((((.........))))))))))...((((((.......(((((.(((..((((((((((..((.....))....))))).)))))..)))..----))))))))))).... ( -26.81) >DroEre_CAF1 10397 108 - 1 AUUUCGUGGCAAUAUUGUGGCCAUGAAAAAGAUUCACAAAAAAAGCGUAGACAUCACGCGAUCAAUUCGCAAGGAACUGAAAUCGAUGAGAGAGGUAGG----UCAG---CCAAA--- .(((((((((.........)))))))))................((((.(....)))))((((..(((....)))(((....((.....))..))).))----))..---.....--- ( -25.30) >DroWil_CAF1 13230 104 - 1 UUUUCGUGGUAAUAUUGUGGCAAUGAAAAAAAUACACAAAAAACAUGUGGAUAUAACACGUUCAAUUCGUAAGGAAUUGAAGCUAAUGCGAGAGGUAAG----AU-------AAU--- ((((((((((....(((((...............))))).....(((((.......)))))(((((((.....))))))).)))...))))))).....----..-------...--- ( -19.16) >DroAna_CAF1 10208 112 - 1 UUUUCGUGGCAAUAUUGUGGCCAUGAGAAAGAUUCACAAAAAGAAUGUGGACAUAACCCGAUCCAUUCGCAAGGAACUCAAAUUAAUGCGAGAGGUAACUUCAAAAG---CUAAC--- ((((((((((.........))))))))))...((((((.......))))))........((.((.((((((..((.......))..)))))).)).....)).....---.....--- ( -24.20) >consensus UUUUCGUGGCAAUAUUGUGGCCAUGAAAAAGAUUCACAAAAAGAAUGUGGACAUAACCCGUUCAAUUCGCAAGGAACUAAAAUUGAUGCGAGAGGUAAG____ACAG___CUAAA___ .(((((((((.........)))))))))..............(((((...........)))))..((((((..((.......))..)))))).......................... (-14.25 = -14.25 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:07 2006