| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,139,850 – 11,139,943 |
| Length | 93 |
| Max. P | 0.559948 |
| Location | 11,139,850 – 11,139,943 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 80.16 |
| Mean single sequence MFE | -25.07 |
| Consensus MFE | -18.76 |
| Energy contribution | -19.15 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.11 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.559948 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11139850 93 - 22407834 --AAAA----UAUUG-CUUAU-------AAUUCGAUCUCCUUCAGACCCGUAGCUGAACUUCUGAAGCGAGGAGAUCCUGUCGAGGCUGAGUGCUUCGACUGUGUCA --....----.....-.....-------.....(((((((((((((...((......)).)))))....))))))))..((((((((.....))))))))....... ( -28.30) >DroSec_CAF1 9001 91 - 1 ----UA----UAUCA-UUUAU-------AAUUCCAUCUACUACAGACCUGUAGCUGAACUUCUGAAGCGAGGAGAUCCUGUCGAGGCCGAGUGCUUCGACUGUGUCA ----..----.....-.....-------.......((..(((((....)))))..)).((((......)))).((..(.((((((((.....)))))))).)..)). ( -23.80) >DroSim_CAF1 9049 91 - 1 ----UA----UAUCA-UUUAU-------AAUUCCAUCUCCUACAGACCUGUAGCUGAACUUCUGAAGCGAGGAGAUCCUGUCGAGGCUGAGUGCUUCGACUGUGUCA ----..----.....-.....-------......((((((((((....))).(((..........))).)))))))...((((((((.....))))))))....... ( -25.00) >DroEre_CAF1 9124 100 - 1 --AGGA----UGCCA-CUUACCCAUUCCAAUUCCAUCUCCUGCAGACCUGUAGCCGAGCUUCUGAAGCGCGGAGAUCCUGUCGAGGCUGAAUGCUUCGACUGCGUCA --..((----(((..-..................((((((((((....))))).((.(((.....))).)))))))...((((((((.....)))))))).))))). ( -32.00) >DroYak_CAF1 9106 95 - 1 GUAGAA----UAUCA-UUUAA-------GAUUGCAUUCCUUACAGACCUGUAGCUGAGCUUCUGAAGCGAGGAGAUCCUGUCGAGGCUGAAUGCUUCGACUGUGUCA ...(..----.(((.-.....-------)))..)..(((((.(((........))).(((.....))))))))((..(.((((((((.....)))))))).)..)). ( -25.70) >DroAna_CAF1 9007 99 - 1 --AAAAUUCAAAUAAUUUUAU------AAAUACUAUCAAUUAAAGACCUGUAGCCGAACUUCUGAAACGUGGAGAUCCCGUAGAGGCAGAGUGCUUCGAUUGUGUCA --...................------.........((((..(((..((.(.(((.....(((...(((.((....)))))))))))).))..)))..))))..... ( -15.60) >consensus __A_AA____UAUCA_UUUAU_______AAUUCCAUCUCCUACAGACCUGUAGCUGAACUUCUGAAGCGAGGAGAUCCUGUCGAGGCUGAGUGCUUCGACUGUGUCA ...................................((..(((((....)))))..)).((((......)))).((..(.((((((((.....)))))))).)..)). (-18.76 = -19.15 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:05 2006