Locus 3814

Sequence ID 2L_DroMel_CAF1
Location 11,137,778 – 11,137,898
Length 120
Max. P 0.591514
window6011

overview

Window 1

Location 11,137,778 – 11,137,898
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.00
Mean single sequence MFE -33.57
Consensus MFE -21.82
Energy contribution -20.38
Covariance contribution -1.44
Combinations/Pair 1.59
Mean z-score -1.42
Structure conservation index 0.65
SVM decision value 0.12
SVM RNA-class probability 0.591514
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11137778 120 + 22407834
UUUCGAAAUUCCAAGGUCGCCUCUUCGUGGCCAAGCAAAAUCACACCGUCUUCGAUGUGGUGGCUUGGCAUGGUAACUAUGUGCCCUUCAAGUACGAUCUGUCCAAGUUCAUGGUGAUUA
..............(((((((........(((((((...((((((.((....)).)))))).))))))).(((......(((((.......)))))......))).......))))))). ( -36.30)
>DroVir_CAF1 8919 120 + 1
UUUCCAAGUACCAAGGCAGCCUGUUUGAGGCAGAACAGGAACACACUGUUUUUGAUGUAGUUGCCUGGCAUGGCAAUUAUGUGCCUUACAAAUACGAUCUAUCGAAAUUUAUGGUAAUUA
........(((((((((.((((.....))))(((((((.......)))))))..(((((((((((......)))))))))))))))).......(((....)))........)))).... ( -36.50)
>DroGri_CAF1 7515 120 + 1
UUUCCAAAUAUCAGGGCAGCUUGUUUGUGGCAAAGCAAAAGCACAGCGUUUUCGAUGUGGUUGCCUGGCACGGCAACUAUGUGCCCUACAAAUACGAUCUAUCGAAGUUUAUGGUCAUCA
...(((......(((((.((((((((...((...))..))))).))).......(((((((((((......)))))))))))))))).......(((....))).......)))...... ( -34.50)
>DroWil_CAF1 8609 120 + 1
UUUCGAAAUAUCAAGGUGGCUUAUUUGUGGCCAAACAGAAUCAUACCGUUUUCGAUGUUGUUGCCUGGCAUGGCAAUUAUGUGCCAUUUAAAUAUGAUCUUAAUAAAUUCAUGGUUAUUA
....((.((((..(((((((...(((((......)))))...............((((.((((((......)))))).)))))))))))..))))..))..................... ( -22.40)
>DroMoj_CAF1 7598 120 + 1
UUUCCAAGUACCAAGGCAGCUUAUUUGUGGCCAAGCAAAAGCACAGCGUCUUCGACGUAGUUGCCUGGCACGGCAAUUACGUGCCCUAUAAAUACGAUCUUUCGAGGUUUAUGGUCAUCA
...(((...(((.((((((((..(((((......)))))......(((((...)))))))))))))((((((.......)))))).........(((....))).)))...)))...... ( -36.90)
>DroAna_CAF1 6870 120 + 1
UAUCCAAGUUCCAGGGCAGCCUUUUUGUGGCCAAACAGAAGCACACGGUCUUCGAUGUGGUGGCCUGGCAUGGCAACUAUGUGCCCUACAAAUACGACUUGGCCAAAUUCAUGGUCAUCA
............(((((((((.......(((((.((((((((.....).))))..)))..))))).)))..(....)....))))))........((..((((((......)))))))). ( -34.80)
>consensus
UUUCCAAAUACCAAGGCAGCCUAUUUGUGGCCAAACAAAAGCACACCGUCUUCGAUGUGGUUGCCUGGCAUGGCAACUAUGUGCCCUACAAAUACGAUCUAUCGAAAUUCAUGGUCAUCA
..........(((((((((((..(((((......)))))...(((.((....)).)))))))))))((((((.......))))))..........................)))...... (-21.82 = -20.38 +  -1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:04 2006