Locus 3813

Sequence ID 2L_DroMel_CAF1
Location 11,133,484 – 11,133,601
Length 117
Max. P 0.601493
window6010

overview

Window 0

Location 11,133,484 – 11,133,601
Length 117
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 76.98
Mean single sequence MFE -53.47
Consensus MFE -31.41
Energy contribution -33.30
Covariance contribution 1.89
Combinations/Pair 1.23
Mean z-score -1.51
Structure conservation index 0.59
SVM decision value 0.14
SVM RNA-class probability 0.601493
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11133484 117 - 22407834
CGCCUUGAAGGAAGUUCGGAGGAAGCUGCCCCGCCAACUGAGCCAAACUAGCAGCCAUCAGAUCAUUGGCCGUGGGCAGACAAGCGGCAGCUGGAGGCACCAAAGCUGCUGCAGCUG
..(((((((.....))).))))..(((((((((((((((((((..........))..))))....)))).)).)))))).)..(((((((((((.....))..)))))))))..... ( -41.50)
>DroPse_CAF1 2569 117 - 1
CUGCCUGCAGGAAGUUCGGCGGUAGCUGUCCGGCGAGCUGGGCCAGACUGGCGGCCAUCAGAUCGUUGGCUGUGGGUAGACAGGCCGCUGCUGGUGGCACCAGGGCACCUGCUGCUG
..((..(((((.((((((.(((.......))).)))))).((((..(((.(((((((.(.....).))))))).))).....))))(((.((((.....))))))).))))).)).. ( -56.50)
>DroGri_CAF1 2731 114 - 1
CGGCCUGCAGAAAAUUGGGCGGCAAUUGUCCGGCCAGCUGAGCCAGGCUGGCCGCCAUCAGAUCAUUGGCCGUGGGCAAGCAGGCAGCUGACGGCGGCACCAGCGGU---GUGGCCA
..((((((....(((((.....)))))((((((((((((......))))))))((((.........))))...))))..)))))).......(((.(((((...)))---)).))). ( -56.50)
>DroMoj_CAF1 2674 114 - 1
CGGCCUGCAGAAAGUUGGGCGGCAACUGGCCGGCCAGCUGGGCCAAGCUGGCGGCCAUCAGAUCAUUGGCCGUGGGCAAGCAGGCGGCCGACGGCGGCACCAGCGGC---GUAGUCA
(.((((((....((((((.((((.....)))).)))))).......(((.(((((((.........))))))).)))..)))))).)..(((.((.((....)).))---...))). ( -60.10)
>DroAna_CAF1 2600 102 - 1
CGCCCUGCAGGAAGUUCGGUGGCAGCUGCCCCGCCAGCUGGGCCAGACUGGCGGCCAUCAGAUCAUUGGCCGUGGGCAGGCAUGCAGCAGCUGAGGGCACCA---------------
.(((((.(((......(((.(((....))))))...((((.(((.(.((.(((((((.........))))))).))).)))...))))..))))))))....--------------- ( -49.70)
>DroPer_CAF1 2569 117 - 1
CUGCCUGCAGGAAGUUCGGCGGUAGCUGUCCGGCGAGCUGGGCCAGACUGGCGGCCAUCAGAUCGUUGGCUGUGGGUAGACAGGCCGCUGCUGGUGGCACCAGGGCACCUGCUGCUG
..((..(((((.((((((.(((.......))).)))))).((((..(((.(((((((.(.....).))))))).))).....))))(((.((((.....))))))).))))).)).. ( -56.50)
>consensus
CGGCCUGCAGGAAGUUCGGCGGCAGCUGUCCGGCCAGCUGGGCCAGACUGGCGGCCAUCAGAUCAUUGGCCGUGGGCAGACAGGCAGCUGCUGGCGGCACCAGCGCA___GCAGCUG
..(((((..((.((((((.(((.......))).))))))...))..(((.(((((((.........))))))).)))...))))).((((....))))................... (-31.41 = -33.30 +   1.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:03 2006