Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,125,917 – 11,126,016 |
Length | 99 |
Max. P | 0.528124 |
Location | 11,125,917 – 11,126,016 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 80.88 |
Mean single sequence MFE | -23.32 |
Consensus MFE | -13.87 |
Energy contribution | -14.07 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.37 |
Mean z-score | -1.70 |
Structure conservation index | 0.59 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.528124 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11125917 99 - 22407834 AUCAUCGAUCAUACUGAUUCUAGCCACCAGCUUAGAUAUUACUUCAACCGGUGACUCCCGCUGGUAAAGCUGUUUAUCUAGCUCGAUUUUAAUGUCCUC ...(((((((.....))..((((....((((((.((.......)).(((((((.....))))))).)))))).....)))).)))))............ ( -21.20) >DroSec_CAF1 5177 99 - 1 AUCAUCGAUUACACUGAUCCUAGCCACCAGCUUUGAUAUUACUUCAACCGGAGACUCUCGCUGGUAAAGCUGCUUAUCGAGCUGGAUUUUAAUAUCCUC ......(((......(((((.(((.((((((.((((.......))))..(....)....))))))...)))((((...)))).))))).....)))... ( -22.60) >DroSim_CAF1 5364 99 - 1 AUCAUCGACUUUACUGAUCCUAGCCACCAGCUUUGAUAUUACUUCAACCGGCGACUCUCGCUGGUAAAGCUGCUUAUCUAGCUGGAUUUUAAUAUCCUC ......((..(((..(((((.(((...(((((((((.......)).(((((((.....))))))))))))))........)))))))).)))..))... ( -26.70) >DroEre_CAF1 5975 99 - 1 GUCAUCGCCAACAGUGAUCCUAUCCACCAGCUUAGAUAUCACUUUUACCGGCGACACCCGCUGGUAAAGCUGCUUGUCUAGAUCGAUUUUAAUGUCAUC ((((((((.....)))))..............((((((.((.(((((((((((.....))))))))))).))..))))))))).(((......)))... ( -26.00) >DroYak_CAF1 5240 99 - 1 AUCAUCGCCCACAGUGAUCCUAGCCACCAGCUUGGAUAUCACUUCAACCGGCGACUCGCGUUGGUAGAGCUGCUUAUCUAAAUCGAUUUUAAUGUCCUC ...((((.....((((((((.(((.....))).)))..)))))((.(((((((.....))))))).))...............))))............ ( -21.90) >DroAna_CAF1 4595 99 - 1 GUCGUCGCCCACUGUUAUUCUGGUUACUAGUUUGGAAAUCACUUCGAGCGGCGAUGCCCUCUGGUACAGCUGAUUAUCCAGUUCCAUCUUUAUGUCCUC ..(((((((.(((........))).....(((((((......)))))))))))))).....(((...(((((......))))))))............. ( -21.50) >consensus AUCAUCGACCACACUGAUCCUAGCCACCAGCUUAGAUAUCACUUCAACCGGCGACUCCCGCUGGUAAAGCUGCUUAUCUAGCUCGAUUUUAAUGUCCUC ...................((((....((((((.((.......)).(((((((.....))))))).)))))).....)))).................. (-13.87 = -14.07 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:02 2006