Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,125,363 – 11,125,457 |
Length | 94 |
Max. P | 0.924687 |
Location | 11,125,363 – 11,125,457 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 75.12 |
Mean single sequence MFE | -17.32 |
Consensus MFE | -10.42 |
Energy contribution | -10.62 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.10 |
Mean z-score | -1.83 |
Structure conservation index | 0.60 |
SVM decision value | 1.16 |
SVM RNA-class probability | 0.924687 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11125363 94 - 22407834 ---UAAACUAU-------UCCAAUAAUUCAUAAUA---AAGAAUGUUUUGGUUAUACUCACAUAUAAAGCCUUGGCAAUUACAUUUCGGUCAAAUCGACCAGGAUGA ---........-------.((((..((((......---..))))...)))).................((....)).....((((..((((.....))))..)))). ( -18.30) >DroPse_CAF1 4598 73 - 1 -----------------CUAC---AUUUCAG-GCA---AA----------GAUAUACUCACAUAUAAGGCCUUGGUAAUCACAGUCCGAUCAAAUCGACCCGGAUGG -----------------.(((---.....((-((.---..----------.((((......))))...))))..)))......(((((.((.....))..))))).. ( -12.40) >DroSec_CAF1 4624 94 - 1 ---UAAACUAU-------UCCAAUAAUUCAUAAUA---AAGAAUGUUUUGGUUAUACUCACAUAUAAAGCCUUGGCAAUUACAUUUCGGUCAAAUCGACCAGGAUGA ---........-------.((((..((((......---..))))...)))).................((....)).....((((..((((.....))))..)))). ( -18.30) >DroSim_CAF1 4811 94 - 1 ---UAAACAAU-------UCCAAUAAUUCAUAAUA---AAGAAUGUUUUGGUCAUACUCACAUAUAAAGCCUUGGCAAUUACAUUUCGGUCAAAUCGACCAGGAUGA ---........-------.((((..((((......---..))))...)))).................((....)).....((((..((((.....))))..)))). ( -18.30) >DroEre_CAF1 5407 106 - 1 UCCUAAAUCAAUUUGAUCUUCAA-AAACCAUAAUAAUGAAAAACAUUUUGGUUAUACUCACAUAUAAAGCCUUGGCAAUUACAUUUCGGUCAAAUCGACCAGGAUGA ((((...((.((((((((.....-.(((((....((((.....)))).)))))...............((....))...........)))))))).))..))))... ( -20.60) >DroYak_CAF1 4700 92 - 1 -----------UUUAAUCUUCAA-AAAUCAUACGA---AAAAACAUUUUGGUUAUACUCACAUAUAGAGCCUUAGCAAUUACAUUUCGGUCGAAUCGACCAGGAUGA -----------............-........(((---((.....)))))((((..(((.......)))...)))).....((((..(((((...)))))..)))). ( -16.00) >consensus ___UAAAC_AU_______UCCAA_AAUUCAUAAUA___AAGAAUGUUUUGGUUAUACUCACAUAUAAAGCCUUGGCAAUUACAUUUCGGUCAAAUCGACCAGGAUGA ....................................................................((....)).....((((..((((.....))))..)))). (-10.42 = -10.62 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:01 2006