Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,124,984 – 11,125,095 |
Length | 111 |
Max. P | 0.779446 |
Location | 11,124,984 – 11,125,095 |
---|---|
Length | 111 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 75.92 |
Mean single sequence MFE | -29.18 |
Consensus MFE | -15.74 |
Energy contribution | -17.88 |
Covariance contribution | 2.14 |
Combinations/Pair | 1.31 |
Mean z-score | -1.82 |
Structure conservation index | 0.54 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.779446 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11124984 111 - 22407834 GCAUUAUGCUAACGCAUAUAAACUCAGCUCGGGAAUUGUGCGAGAGAAAUAGACAGAAGUUUUGAUCGCUUAUUUUUCGGAGCUGGCUGUUUUGUGCUGUUAAAAAAAAGA ((.....))(((((((((.(((((((((((.((((....((((..(((((........)))))..)))).....)))).)))))))..))))))))).))))......... ( -33.50) >DroGri_CAF1 3875 111 - 1 GUGCAAUGCUAAGGCAGACGAAUUCAGCGUCCUUUUCAUGCGACAAAAAUACACAAAAAUUGUGAUCAUCUAUUUUACGCAGUAAACUAUUUUGCGCUAAAAAAAGAAAAA (((((((((....)))((((.......)))).......((((...((((((((((.....))))......)))))).))))..........)))))).............. ( -18.90) >DroSec_CAF1 4245 111 - 1 GCAUUAUGCUAACGCAUAUAAACUCAGCUCGGGAAUUGUGCGAGAGAAAUAGACAGAAGUUUUGAUCGCUUAUUUUUCGGAGCUGGCUGUUUUGAGCUGUUAAAGAAAAGA ((..(((((....))))).(((((((((((.((((....((((..(((((........)))))..)))).....)))).)))))))..))))...)).............. ( -32.00) >DroEre_CAF1 5033 106 - 1 GCAUUAUGCUAACGCAAAUAAACUCAGCUCGGGAAUCGUGCGAGAGGAAUAGACAGAAGUUCUGAUCGCUUAUUUUUCGAAGCUGGUUGUUUUGAGCUGUUAAAGA----- ((....(((....)))....(((.(((((((..((....((((..(((((........)))))..))))....))..)).)))))))).......)).........----- ( -31.80) >DroYak_CAF1 4321 111 - 1 GCAUUAUGCUAACGCAGAUAAACUCAGCUCGGGAAUCGUGCGAGAGAAAUAGACAGAAGUUCUGAUCGCUUAUUUUUCGGAGCAGGUUGUUCUGAGCUGUUAAAGAGAAGA ......(((....)))........((((((((((..(.(((..(((((((((((((.....))).))...))))))))...))).)...))))))))))............ ( -34.50) >DroAna_CAF1 3680 104 - 1 GCAUGAUGCUGACGCAAAUGAACUCAGCGCCCAUGUCGUGGGAGAGAAACAAACAAAAGUCCUGAUCGUUGAUUUUCCGCAACUGAUUGCUCUGAGCUGUAAG-------G .(((..(((....))).)))..(((((.((....((.((((((((..(((...((.......))...)))..)))))))).)).....)).))))).......-------. ( -24.40) >consensus GCAUUAUGCUAACGCAAAUAAACUCAGCUCGGGAAUCGUGCGAGAGAAAUAGACAGAAGUUCUGAUCGCUUAUUUUUCGGAGCUGGCUGUUUUGAGCUGUUAAAGAAAAGA ......(((....)))........((((((((((.....((..(((((((((...((........))..)))))))))...))......))))))))))............ (-15.74 = -17.88 + 2.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:00 2006