Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,196,228 – 1,196,347 |
Length | 119 |
Max. P | 0.532526 |
Location | 1,196,228 – 1,196,347 |
---|---|
Length | 119 |
Sequences | 6 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 90.08 |
Mean single sequence MFE | -41.00 |
Consensus MFE | -34.45 |
Energy contribution | -34.82 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.14 |
Mean z-score | -1.62 |
Structure conservation index | 0.84 |
SVM decision value | -0.00 |
SVM RNA-class probability | 0.532526 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1196228 119 - 22407834 AUCCUUGGGGAAUGGCAGCCCGUAUCCCUGGAUGCGCUUCACCGUGUUCGGCUUGAUGAUCUCCUGCAUGGUGCUGAUGCGCAACUUGUCGCCGGACAUGGUAGGAACUUGGAAGACAA .((((..((((((((....)))).))))..).....(((.((((((((((((...(((........))).((((....))))........))))))))))))))).....)))...... ( -41.90) >DroVir_CAF1 18756 119 - 1 AUCCUUGGGAAAGGGUAAUCCAUAGCCCUGGAUGCGUUUCACAGUGUUCGGCUUGAUGAUCUCCUGCAUGGUGCUGAUGCGCAGUUUAUCGCCGGACAUUGUAGGAACUUGAAAGACAA ((((..(((....((....))....))).))))..(((((((((((((((((..(((((....((((.....((....)))))).))))))))))))))))).)))))........... ( -42.80) >DroGri_CAF1 15134 119 - 1 AUCCUUGGGAAAGGGCAGGCCAUAGCCCUGGAUGCGUUUCACAGUGUUCGGCUUAAUGAUCUCCUGCAUGGUGCUGAUGCGCAGUUUAUCGCCGGACAUUGUAGGAACUUGAAAGACAA ((((..(((....((....))....))).))))..(((((((((((((((((...(((........))).((((....))))........)))))))))))).)))))........... ( -42.30) >DroWil_CAF1 27341 119 - 1 AUCCUUUGGGAAGGGUAAACCAUAGCCCUGAAUACGUUUCACUGUAUUCGGUUUGAUGAUCUCCUGCAUGGUGCUAAUGCGUAAUUUAUCGCCGGACAUUGUAGGAACUUGAAAGACAA .(((....)))(((((........)))))(((((((......))))))).((((..(((..((((((((((((.(((........))).))))).....)))))))..)))..)))).. ( -31.40) >DroMoj_CAF1 17965 119 - 1 AUCUUUUGGGAAGGGCAGGCCAUAGCCCUGGAUGCGUUUCACAGUGUUCGGCUUGAUGAUCUCCUGCAUGGUGCUAAUGCGCAGCUUGUCGCCAGACAUUGUAGGAACUUGAAAGACAA .(((((..((.....((((((..(((.(((((......)).))).))).))))))......(((((((..((((....))))....((((....)))).))))))).))..)))))... ( -41.30) >DroAna_CAF1 12443 119 - 1 GUCCUUGGGGAAGGGCAGACCAUAGCCCUGGAUUCGUUUCACCGUGUUCGGCUUGAUGAUCUCCUGCAUGGUGCUGAUGCGUAGCUUAUCGCCGGACAUGGUAGGAACUUGGAAGACAA .(((..(((..(((((........)))))...)))(((((((((((((((((..(((((.((..(((((.......))))).)).))))))))))))))))).)))))..)))...... ( -46.30) >consensus AUCCUUGGGGAAGGGCAGACCAUAGCCCUGGAUGCGUUUCACAGUGUUCGGCUUGAUGAUCUCCUGCAUGGUGCUGAUGCGCAGCUUAUCGCCGGACAUUGUAGGAACUUGAAAGACAA ((((...(((...((....))....))).))))..(((((((((((((((((..(((((.....(((((.......)))))....))))))))))))))))).)))))........... (-34.45 = -34.82 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:29 2006