Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,124,513 – 11,124,627 |
Length | 114 |
Max. P | 0.546848 |
Location | 11,124,513 – 11,124,627 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 86.43 |
Mean single sequence MFE | -32.44 |
Consensus MFE | -25.85 |
Energy contribution | -25.07 |
Covariance contribution | -0.77 |
Combinations/Pair | 1.39 |
Mean z-score | -1.87 |
Structure conservation index | 0.80 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.546848 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11124513 114 + 22407834 CGCGGCUGUAUCGUACCUCACUCAAGACUCCCAGUCAGCCUACUUUGCGGUGGCGUAUCAGAGCAAACUACUGCUUCACGUUAUGAAAUGCUCCACCGGCCAUACUAUCACCCA .(((((((.........((......))........))))).......((((((.(((((((((((......))))).......)))..))).)))))))).............. ( -26.34) >DroSec_CAF1 3775 114 + 1 CGUGGCUGUAUCGUACCUCACUCAAAACUCCCAGUCAGCCUACUUUGCGGUGGCGUAUCAGAGCAAACUACUGCUCCACGUUAUGAAAUGCGCCACCGGCCAUACUAUCACCCA .(((((((((..(((.((.(((..........))).))..)))..)))(((((((((((((((((......))))).......)))..)))))))))))))))........... ( -34.31) >DroSim_CAF1 3962 114 + 1 CGUGGCUGUAUCGUACCUCACCCAAAACUCCCAGUCAGCCUACUUUGCGGUGGCGUAUCAGAGCAAACUACUGCUCCACGUUAUGAAAUGCGCCACCGGCCAUACUAUCACCCA .(((((((((..(((.((.((............)).))..)))..)))(((((((((((((((((......))))).......)))..)))))))))))))))........... ( -32.91) >DroEre_CAF1 4541 114 + 1 CGUGGCUGUAUCGUACCUCUCCCAAGACUCCCAGUCGGCCUACUUUGCGGUGGCGUAUCAAAGCAAACUACUGCUUCACGUUAUGAACUGCGCCACCGGUCACACUGUCACCCA .(((((((((..(((.....((...(((.....)))))..)))..)))(((((((((((((((((......))))).......)))..)))))))))))))))........... ( -33.31) >DroYak_CAF1 3835 114 + 1 CGUGGCUGUAUCGUACCUCUCUCAAAACUCCCAGACGGCUUACUUUGUGGUGGCGUAUCAAAGCAAACUACUGCUUCACGUUAUGAACUGCGCCACCGGCCACACUAUCACCCA .((((((.....((((((((............))).))..))).....(((((((((((((((((......))))).......)))..)))))))))))))))........... ( -32.81) >DroAna_CAF1 3216 114 + 1 UGUGGCGGUAUCCUACCUGUCGCAGGAUUCCCAGACUGCCUACUUCGCGGUGGCCUACCAGGAGAAACUCCUCAUGCACGUGAUGAACUGUGCCACUGGCCAAACGAUUAGUAA ...((((((......((((...))))........))))))(((((((...(((((....(((((...)))))...((((((.....)).))))....)))))..)))..)))). ( -34.94) >consensus CGUGGCUGUAUCGUACCUCACUCAAAACUCCCAGUCAGCCUACUUUGCGGUGGCGUAUCAGAGCAAACUACUGCUUCACGUUAUGAAAUGCGCCACCGGCCAUACUAUCACCCA ...(((((...........................))))).......((((((((((((((((((......))))).......)))..))))))))))................ (-25.85 = -25.07 + -0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:59 2006