Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,124,161 – 11,124,258 |
Length | 97 |
Max. P | 0.515581 |
Location | 11,124,161 – 11,124,258 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 79.33 |
Mean single sequence MFE | -27.38 |
Consensus MFE | -19.85 |
Energy contribution | -19.63 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.36 |
Mean z-score | -1.01 |
Structure conservation index | 0.72 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.515581 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11124161 97 + 22407834 ------GUUA--AAUUAGUUUCACAUGGCCACUGAUUUGCAGGCGGACAUACCAGGAUGUCCUGGAACUAUCAGAGGUUAGUUUGGACAUCUCCCUGCAGAGGAA ------...(--(((((((.((....))..))))))))(((((.((.....)).((((((((..((((((........)))))))))))))).)))))....... ( -28.90) >DroSec_CAF1 3422 97 + 1 ------GUUA--AAGCAGUUUCACAUGGCCACCGAUUUGCAGGCGGACAUACCAGGAUGUCCUCGAACUAUCAGAGGUCAGCUUGGACAUCUCCCUGCAGCGGAA ------....--...................(((...((((((.(((....(((((.((.((((.........)))).)).)))))...))).)))))).))).. ( -31.40) >DroSim_CAF1 3407 97 + 1 ------GUUA--AAGCAGUUUCACAUGGCCACCGAUUUGCAGGCGGACAUACCAGGAUGUCCUGGAACUAUCAGAGGUCAGCUUGGACAUCUCCCUGCAGCGGAA ------....--...................(((...((((((.(((....(((((.((.(((.((....))..))).)).)))))...))).)))))).))).. ( -28.70) >DroEre_CAF1 4189 97 + 1 ------CUAA--ACAGAGUUUCACAUGACCACUUACCUGCAGGCGGGCAUACCAAGAUGUGCUGGAACUAUCAGAGGUCAGCUUGGACAUCUCUCUGCAGAGGAA ------....--...((((.((....))..))))..(((((((.(((....(((((.((..((((.....))))....)).)))))....))))))))))..... ( -23.40) >DroYak_CAF1 3483 97 + 1 ------CCAA--ACAGAGUUUCACAUGGCCGCUCAUUUGCAGGCGGACAUACCAAGAUGUCCUGGAACUAUCAGAGGUCAGCUUGGACAUCUCUCUGCAGAGGAA ------((..--.(((((......(((.(((((........))))).)))....((((((((.((.(((......)))...)).)))))))))))))....)).. ( -29.20) >DroAna_CAF1 2867 103 + 1 AAAUUAAUUAUUAACCAUAUUCAUGUG--UGUUUCCCAAUAGGCGCACACAACAAGAUGUCCUGGAACUCGUGGAAAUCAGCUUGGAUAUCUCUCUUCAGAGGAA ..............((.......((((--(((...((....)).)))))))...((((((((.((..((.((....)).)))).)))))))).........)).. ( -22.70) >consensus ______GUUA__AAACAGUUUCACAUGGCCACUGAUUUGCAGGCGGACAUACCAAGAUGUCCUGGAACUAUCAGAGGUCAGCUUGGACAUCUCCCUGCAGAGGAA ...............................(((..(((((((.((.....)).((((((((.((.(((......)))...)).)))))))).)))))))))).. (-19.85 = -19.63 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:58 2006