Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,108,620 – 11,108,740 |
Length | 120 |
Max. P | 0.959465 |
Location | 11,108,620 – 11,108,740 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.94 |
Mean single sequence MFE | -32.15 |
Consensus MFE | -20.00 |
Energy contribution | -19.95 |
Covariance contribution | -0.05 |
Combinations/Pair | 1.65 |
Mean z-score | -2.53 |
Structure conservation index | 0.62 |
SVM decision value | 1.50 |
SVM RNA-class probability | 0.959465 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11108620 120 - 22407834 UUGAGGUACUCCUUCGCCUGAUCUAUUUCUCCCGCUUUUUUGGCCUCUAUAGCAGCUAGCUUAAACUCCUUUUGGCGCUCGAGGAGCAGUUUCAUUUGUUGCUCGGCAAUAUUAUUCUUC ..((((....)))).(((...............(((.....)))......(((.....)))............)))((.((((.(((((......))))).))))))............. ( -25.00) >DroVir_CAF1 3212 120 - 1 UUUAGGUAUUCCUUGGCCUGAUCGAUUUCGCCCGCUUUUUUGGCUGCUAUGGCGGCCACUUUAAACUCCUUUUGCCGUUCGAGCAGCAAUUUCAUUUGUUGCUCCGCCAGAUUACUCUUC ....((((.((..((((..((.((.....(....).....(((((((....))))))).................)).))(((((((((......))))))))).)))))).)))).... ( -34.30) >DroGri_CAF1 3253 120 - 1 CUAAGGUAUUCCUUGGCCUGAUCAAUUUCACCAGCUUUCUUGGCUGCUACAGCGGCAAUUUUGAACUCCUUUUGUCGCUCGAGCAGUAAUUUCAUUUGCUGCUCCGCCAAAUUGCUCUUU ((((((....))))))..(((......)))..(((....(((((......((((((((.............)))))))).(((((((((......))))))))).)))))...))).... ( -37.72) >DroWil_CAF1 1566 120 - 1 UUCAGAUAUUCCUUAGCCUGAUCGAUUUCGCCCGCCUUUUUGGCUGCUAUGGCAGCUACUUUGAAUUCCUUUUGGCGUUCCAAUAAGAGUUUCAUUUGUUGUUCGGCCAGAUUACUCUUC .((((.((.....))..))))..(((((.(((((((....(((((((....)))))))....(((.....)))))))...(((((((.......)))))))...))).)))))....... ( -26.10) >DroMoj_CAF1 1617 120 - 1 UUUAGAUAUUCCUUGGCUUGAUCGAUCUCGCCCGCUUUCUUUGCGGCUAGGGCCGCCAGUUUAAACUCCCUUUGGCGCUCGAGCAAUAAUUUCAUUUGUUGCUCAGCUAGAUUGCUUUUC ......................((((((.((((((.......))))...((((.(((((............)))))))))(((((((((......))))))))).)).))))))...... ( -36.20) >DroAna_CAF1 1549 120 - 1 UUCAAGUACUCCUUGGCUUGGUCAAUCUCCCCAGCUUUCUUUGCGUCUAUUGCAGCCAUCUUGAACUCCUUUUGACGUUCCAGCAGCAGCUUCAUCUGCUGCUCGGCAAGGUUGCUCUUU ....((((..((((((((.((........)).)))).....((((.....))))(((.....((((((.....)).)))).((((((((......)))))))).))))))).)))).... ( -33.60) >consensus UUCAGGUAUUCCUUGGCCUGAUCGAUUUCGCCCGCUUUCUUGGCUGCUAUGGCAGCCACUUUAAACUCCUUUUGGCGCUCGAGCAGCAAUUUCAUUUGUUGCUCGGCCAGAUUACUCUUC .((((((........))))))............(((......(((((....)))))........................(((((((((......))))))))))))............. (-20.00 = -19.95 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:51 2006