Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,108,169 – 11,108,259 |
Length | 90 |
Max. P | 0.938491 |
Location | 11,108,169 – 11,108,259 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 80.80 |
Mean single sequence MFE | -36.78 |
Consensus MFE | -20.78 |
Energy contribution | -21.70 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.36 |
Mean z-score | -3.08 |
Structure conservation index | 0.56 |
SVM decision value | 1.27 |
SVM RNA-class probability | 0.938491 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11108169 90 - 22407834 CUAAACGUUGCUGCAGAGCCUCCAACAUAUUUGUUGCAGCUGCUAGAACAGGAGCAGGAGCAACAGGUGUGGGUUCUGGGGC------AGCAGUAG ......((((((.(((((((.....((((((((((((..(((((........)))))..))))))))))))))))))).)))------)))..... ( -44.10) >DroSec_CAF1 1104 90 - 1 CUAAACGUUGCUGGAGAGCCUCCAACAUAUUUGUUGCAGCUGCUGGAACAGGAGCAGGAGCAACAGGUGUGGGUUCUGGGGC------AGGAGUAG ....((.(((((..((((((.....((((((((((((..(((((........)))))..))))))))))))))))))..)))------))..)).. ( -36.20) >DroSim_CAF1 1106 90 - 1 CUAAACGUUGCUGCAGAGCCUCCAACAUAUUUGUUGCAGCUGCUGGAACAGGAGCAGGAGCAACAGGUGUGGGUUCUGGGGC------AGGAGUAG ....((.(((((.(((((((.....((((((((((((..(((((........)))))..))))))))))))))))))).)))------))..)).. ( -40.80) >DroEre_CAF1 1105 90 - 1 CUAAGCGUUGCUGCAGAGCCUCCAACAUAUUUGUUGGAGCUGUUGGGACCGGAGUAGGCACAACAGGUGUGGGAUCUGGAAU------AGGAGCAG ........((((.(..(((.(((((((....)))))))))).......(((((....((((.....))))....)))))...------.).)))). ( -30.10) >DroYak_CAF1 1094 90 - 1 CUAAACGUUGCUGCAGAGCCUCCAACAUAUUUGUGGCAGCUGUUGGAACGGGUGCUGGAGCAACAGGUGUGGGAUCUGGGGC------AGGAGUAG ....((.(((((.((((...(((.((((..((((((((.((((....)))).))))...))))...)))).))))))).)))------))..)).. ( -30.70) >DroAna_CAF1 1083 96 - 1 CCAAACGCUGUUGCAGGGCUUCCAGUAUAGUAGAAGCUGUUGGUGGUACCGCUGCUGGAGGAGCUGGGGCGGGAGCUGGAGCUGGCGCGGCAGGAG .......(((((((....(((((((((((((....))))).((((....))))))))))))((((..(((....)))..))))...)))))))... ( -38.80) >consensus CUAAACGUUGCUGCAGAGCCUCCAACAUAUUUGUUGCAGCUGCUGGAACAGGAGCAGGAGCAACAGGUGUGGGAUCUGGGGC______AGGAGUAG ((.......(((.((((.((.....((((((((((((..(((((........)))))..)))))))))))))).)))).)))......))...... (-20.78 = -21.70 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:50 2006