Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,192,418 – 1,192,538 |
Length | 120 |
Max. P | 0.592337 |
Location | 1,192,418 – 1,192,538 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.67 |
Mean single sequence MFE | -44.37 |
Consensus MFE | -27.30 |
Energy contribution | -26.17 |
Covariance contribution | -1.13 |
Combinations/Pair | 1.47 |
Mean z-score | -2.65 |
Structure conservation index | 0.62 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.592337 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1192418 120 - 22407834 AAUGUCGGCGGGAAUUUUUCCGGGCGCCUGGUCGCCCUCCUUCUGGAAGGUGACCUUGGUGCCGGACUUCCAGCCGGGCUUGAUGGAUAUCGCCAGGAACUUCUCCUCCUUGCGGGAACU ....(((((.((((....(((((.((((.(((((((.(((....))).)))))))..))))))))).)))).)))))............((((.((((........)))).))))..... ( -55.20) >DroVir_CAF1 13454 120 - 1 AAUAUCCGCUGGUAUUUUGCCGGGCGCCUGAUCGCCCUCCUUCUGGAACGUGACUUUGGUGCCCGAUUUCCAGCCGGGUUUAAUAGAUAUUUGCAGGACUUUGUCCUCCUUCUUGGAGCU ...(((((((((........((((((((.((((((..(((....)))..)))).)).))))))))....)))).))))).............((.((((...))))(((.....))))). ( -42.90) >DroGri_CAF1 10184 120 - 1 AAUAUCCGCUGGUAUUUUGCCGGGCGCCUGGUCGCCUUCCUUUUGGAACGUGACUUUGGUGCCCGAUUUCCAGCCGGGCUUAAUAGAUAUUUGCAGGACUUUGUCCUCCUUCUUGGAGCU .....(((((((........((((((((.((((((.((((....)))).))))))..))))))))....)))).)))((((...(((.....(.(((((...))))).).)))..)))). ( -50.80) >DroWil_CAF1 19545 120 - 1 AAUAUCCGCUGGUAUUUUACCGGGUGCUUGAUCACCUUCCUUUUGGAAGGUGACUUUGGUGCCAGAUUUCCAACCGGGCUUAAUUGAUAUCUGUAGAACUUUAUCUUCCUUCUUGGAGCU .......(((((((...)))))((..((.(((((((((((....))))))))).)).))..)).....(((((..(((.......((((...(.....)..))))..)))..))))))). ( -35.10) >DroMoj_CAF1 10831 120 - 1 AAUAUCCGCGGGUAUUUUGCCGGGCGCCUGGUCGCCCUCCUUCUGGAACGUGACUUUGGUGCCUGAUUUCCAGCCGGGUUUAAUAGAUAUUUGCAGGACUUUAUCCUCCUUUUUCGAGCU ....(((((((((((((...((((((((.((((((..(((....)))..))))))..))))))))...(((....)))......)))))))))).))).......(((.......))).. ( -39.90) >DroAna_CAF1 8550 120 - 1 UAUGUCGGCGGGGAUUUUUCCUGGCCCCUGAUCGCCCUCCUUUUGGAAGGUGACCUUGGUCCCGGACUUCCAGCCUGGCUUGAUGGAUAUCUGAAGGGUCUUGUCCUCUUUGCGGGAGCU ......(((.((((....)))).))).....(((((.(((....))).)))))....(.(((((((..((((..(......).))))..)).((((((......)).)))).))))).). ( -42.30) >consensus AAUAUCCGCGGGUAUUUUGCCGGGCGCCUGAUCGCCCUCCUUCUGGAACGUGACUUUGGUGCCCGAUUUCCAGCCGGGCUUAAUAGAUAUCUGCAGGACUUUGUCCUCCUUCUUGGAGCU ...(((....((((...))))(((((((.((((((..(((....)))..)))).)).))))))))))((((((..(((................((((.....)))))))..)))))).. (-27.30 = -26.17 + -1.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:28 2006