| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 173,451 – 173,552 |
| Length | 101 |
| Max. P | 0.980042 |
| Location | 173,451 – 173,552 |
|---|---|
| Length | 101 |
| Sequences | 4 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 94.44 |
| Mean single sequence MFE | -18.00 |
| Consensus MFE | -17.59 |
| Energy contribution | -17.41 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.98 |
| SVM decision value | 1.85 |
| SVM RNA-class probability | 0.980042 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 173451 101 - 22407834 GGCCAACAAACCCAAUCUAGAACGUGGGUGGUGAAACUUAAAAUCAAACCCAAUUUCACCAAUAUACUUUAUGCACACGGCAUAAAAAGAAAAAACGAAGA .........(((((..........)))))(((((((.................))))))).......(((((((.....)))))))............... ( -17.63) >DroSec_CAF1 20360 97 - 1 GGCCAACAAACCCAAUCUAGAACGUGGGUGGUGAAACUUAACAUCAAACCCAAUUUCACCAAUAUACU----GCACACGGCAUAAAAAGAAAAAACGAAGA .(((.....(((((..........)))))(((((((.................)))))))........----......))).................... ( -17.53) >DroSim_CAF1 20512 97 - 1 GGCCAACAAACCCAAUCUAGAACGUGGGUGGUGAAACUUAACAUCAAACCCAAUUUCACCAAUAUACU----GCACACGGCAUAAAAAGAAAAAACCAAGA .(((.....(((((..........)))))(((((((.................)))))))........----......))).................... ( -17.53) >DroYak_CAF1 20542 97 - 1 GGCCAACAAACCCAAUCUAGAACGUGGGUGGUGGAACUGAACAUUAAACCCAAUUUCACCAAUAUACU----GCACUCGGCAUACAAAGAAAAAACGAAGA .(((.....(((((..........)))))(((((((.((...........)).)))))))........----......))).................... ( -19.30) >consensus GGCCAACAAACCCAAUCUAGAACGUGGGUGGUGAAACUUAACAUCAAACCCAAUUUCACCAAUAUACU____GCACACGGCAUAAAAAGAAAAAACGAAGA .(((.....(((((..........)))))(((((((.................)))))))..................))).................... (-17.59 = -17.41 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:55 2006