Locus 3798

Sequence ID 2L_DroMel_CAF1
Location 11,103,500 – 11,103,593
Length 93
Max. P 0.572337
window5988

overview

Window 8

Location 11,103,500 – 11,103,593
Length 93
Sequences 4
Columns 111
Reading direction reverse
Mean pairwise identity 70.87
Mean single sequence MFE -22.11
Consensus MFE -10.50
Energy contribution -10.62
Covariance contribution 0.12
Combinations/Pair 1.09
Mean z-score -1.87
Structure conservation index 0.47
SVM decision value 0.08
SVM RNA-class probability 0.572337
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11103500 93 - 22407834
---AUU----------GAAAUGAAAAUACA-GUGUCUUUUAAG-AGUCC--ACAAUUGUUAAGCAUUUGCAAAGGAAACCGUA-AACUUCGGGAAACCGAAUUUGCUUAUA
---.((----------((((((.....(((-(((.(((....)-))..)--))...)))....))))).))).(....).(((-((.(((((....))))))))))..... ( -20.70)
>DroSec_CAF1 6724 95 - 1
---AUU----------GAAAUGGAAAUUCA-GUCACUUUUAAG-AGUCUGAAAAAUUGUUUAGCAUUUGCAAAGGCAACCAUA-AACUUCGGGCCACCGAAGUUGCCUAUA
---...----------...((((...((((-(..((((....)-))))))))...((((((.((....))..)))))))))).-((((((((....))))))))....... ( -24.20)
>DroSim_CAF1 6982 95 - 1
---AUU----------GAAAUGAAAAUACU-GUGUCUUUUAAG-AGUCUGCAAAAUUGUUUAGCAUUUGCAAAGGAAACCAUU-AUCUUCGGGCCACCGAAGUUGCCUAUU
---...----------.(((((.(((((.(-(((.(((....)-)).).)))....)))))..)))))((((.(....)....-..((((((....))))))))))..... ( -16.50)
>DroEre_CAF1 6823 109 - 1
AUUUCUGAGUUUCCCACAAGAAAAAAUACAAGUUUCGUUAAAUAAAUGUGGGAAAUAUUGUAACAUUUGCAA-GGAAGCCAGAAAAUUUCGGUCACCCGAAGUUGC-UAUU
..(((((.((((((((((.........((.......))........)))))))))).(((((.....)))))-......)))))((((((((....))))))))..-.... ( -27.03)
>consensus
___AUU__________GAAAUGAAAAUACA_GUGUCUUUUAAG_AGUCUG_AAAAUUGUUUAGCAUUUGCAAAGGAAACCAUA_AACUUCGGGCAACCGAAGUUGCCUAUA
....................................................................((((.(....).......((((((....))))))))))..... (-10.50 = -10.62 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:41 2006