Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,103,055 – 11,103,158 |
Length | 103 |
Max. P | 0.745961 |
Location | 11,103,055 – 11,103,158 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 85.21 |
Mean single sequence MFE | -51.47 |
Consensus MFE | -37.28 |
Energy contribution | -38.07 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.17 |
Mean z-score | -3.01 |
Structure conservation index | 0.72 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.745961 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11103055 103 + 22407834 GAAGGCAGAAACGCGCUGCUGU------GCCUGCUGAAGAGUGAUUCUUGUGGGCGGCACCACUGCUGCCUGUGGCGGUGGUGCUGCCGGCGGCAAGGAGUGUAGCUGC ....((((....(((((.((.(------(((.....(((((...)))))((.((((((((((((((((....)))))))))))))))).)))))))).)))))..)))) ( -55.10) >DroSec_CAF1 6285 103 + 1 GAACGCAGAAACUCGCUGCUGU------GCCUGCUGAAGAGUGAUUCUUGUGGGCGGCACCACUGCUGCCUGUGGCGGUGGUGCUGCCGGCGGCAAUGAGUGUAGCUGC ....((((..(((((.((((((------(((..(.(((......)))..)..)))((((.(((..(((((...)))))..))).)))).)))))).)))))....)))) ( -53.80) >DroSim_CAF1 6536 103 + 1 GAAAGCAGAAACUCGCUGCUGU------GCCUGCUGAAGAGUGAUUCUUGUGGGCGGCACCACUGCUGCCUGUGGCGGUGGUGCUGCCGGCGGCAAGGAGUGUAGCUGC ....((((.....((((.((.(------(((.....(((((...)))))((.((((((((((((((((....)))))))))))))))).)))))))).))))...)))) ( -53.90) >DroEre_CAF1 6384 103 + 1 GAAGGCAGAAAUACGCUGCUGA------GCCUGCUGAAGAGUGAUUCUUGUGGGCGGCACCACUGCUGCCUGUGGCGGCGGUGCGGUCGGCGGCAAGGAGUGAAGCUGC ....((((...(((((((((..------(((..(.(((......)))..)..)))(((..((((((((((...))))))))))..))))))))).....)))...)))) ( -46.60) >DroYak_CAF1 6272 103 + 1 GAAGGCGGAAACACGCUGCUGA------GCCUGCUGAAGAGUGAUUCUUGUGGGCGGCACCACUGCUGCCUGUGGCGGCGGAGCGGCCGGCGGCAAGGAGUGAAGCUGC ...((((....)..((((((..------(((..(.(((......)))..)..)))(((..(.((((((((...)))))))).)..)))))))))..........))).. ( -46.50) >DroPer_CAF1 6565 103 + 1 AAAGGCUGAUACCCGCUGCUGCGUUUGGGUCUGCUGCAGUGUAAUCCGUGUCGGAGGCAC-ACCGC---C--AGGCGGUGGCUGGGCCGGCGGCAGCGAGUGCAGCUGC ...(((((.(((.(((((((((....((((.(((......)))))))....(((.(((.(-(((((---.--..)))))))))...)))))))))))).)))))))).. ( -52.90) >consensus GAAGGCAGAAACACGCUGCUGU______GCCUGCUGAAGAGUGAUUCUUGUGGGCGGCACCACUGCUGCCUGUGGCGGUGGUGCGGCCGGCGGCAAGGAGUGUAGCUGC ....((((..((.(((((((........((((((.(((......)))..))))))(((..((((((((((...))))))))))..)))))))))...).))....)))) (-37.28 = -38.07 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:39 2006