Locus 3796

Sequence ID 2L_DroMel_CAF1
Location 11,098,465 – 11,098,573
Length 108
Max. P 0.778278
window5986

overview

Window 6

Location 11,098,465 – 11,098,573
Length 108
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 81.10
Mean single sequence MFE -41.16
Consensus MFE -22.73
Energy contribution -22.48
Covariance contribution -0.25
Combinations/Pair 1.30
Mean z-score -2.48
Structure conservation index 0.55
SVM decision value 0.55
SVM RNA-class probability 0.778278
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11098465 108 - 22407834
CGAUGACGAUUCCAAUUCCAC---CAGUGCCCUUGUGCUGCACAUGUUUGUGGUGCAGGCAAAGAGCCUGCAGGAAUGUCAAAUAAUCUACCAGCCAUGUGUGGC------UGAAAA
...((((.(((((........---(((..(....)..)))((((....)))).(((((((.....))))))))))))))))..........((((((....))))------)).... ( -40.80)
>DroVir_CAF1 2552 111 - 1
CGACGAUGAUAGCACUGCCACAACCGAUGCCCUAGUGGUGCAUAUGUUUGUGGUGCAGGCCAAGAGCUUGCAGGAGUGCCAGAUUAUCUAUCAGCCAUGUGUGGC------CGAAAA
....((((((.((((((((((((.((((((((....)).)))).)).)))))))((((((.....))))))...)))))...))))))..((.((((....))))------.))... ( -44.10)
>DroPse_CAF1 2130 108 - 1
UGAUGAUGAGAACAAUUCCAC---AUACGCGCUGGUGGUGCACAUGUUUGUCGUGCAGGCCAAGAGCCUGCAGGAGUGCCACAUCAUCUACCAGCCGUGUGUGCC------CGAGAA
..................(((---(((((.((((((((.((((.......((.(((((((.....))))))).))))))........))))))))))))))))..------...... ( -42.91)
>DroGri_CAF1 2061 111 - 1
UGAUGAUGAGAGCAAUGCCACCACCGAUGCGCUGGUGGUGCACAUGUUUGUCGUGCAGGCCAAGAGUCUGCAGGAGUGCCAGAUUAUCUAUCAGCCCUGUGUGCC------CGAAAA
..(((((..(((((.(((.(((((((......))))))))))..))))))))))((((((.....)))))).((.(..((((..............))).)..))------)..... ( -36.34)
>DroAna_CAF1 1670 114 - 1
UGACGAGGACAACAACUCUAC---CUAUGCCCUGGUGUUGCACAUGUUCGUGGUGCAGGCCAAGAGCCUGCAAGAGUGCCAGAUAAUCUAUCAGCCAUGCAUGGCGGCAGCAGAAAA
....(((........)))...---.......(((.((((((.(((((..(((((((((((.....))))))..........((((...)))).)))))))))))))))).))).... ( -39.90)
>DroPer_CAF1 2153 108 - 1
UGAUGAUGAGAACAAUUCCAC---AUACGCGCUGGUGGUGCACAUGUUUGUCGUGCAGGCCAAGAGCCUGCAGGAGUGCCACAUCAUCUACCAGCCGUGUGUGCC------CGAGAA
..................(((---(((((.((((((((.((((.......((.(((((((.....))))))).))))))........))))))))))))))))..------...... ( -42.91)
>consensus
UGAUGAUGAGAACAAUUCCAC___CUAUGCCCUGGUGGUGCACAUGUUUGUCGUGCAGGCCAAGAGCCUGCAGGAGUGCCAGAUAAUCUACCAGCCAUGUGUGCC______CGAAAA
....................................((((((((((.(((...(((((((.....)))))))(((...........)))..))).))))))))))............ (-22.73 = -22.48 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:37 2006